Pairwise Alignments

Query, 529 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 540 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score =  199 bits (507), Expect = 2e-55
 Identities = 117/352 (33%), Positives = 203/352 (57%), Gaps = 5/352 (1%)

Query: 33  SGYLLATLCLIALAVILIFNINKLI-RHLRQLERAAHHLGEGDLSYQLDEKDAGVFNSVV 91
           SG +LA L  I + V+    I +LI R + Q  ++A  + +GDL+  +  +       ++
Sbjct: 193 SGIVLAFLIAIIIGVL----ITRLITRPIAQAVQSAQRIAQGDLTQAIITERTDEAGQLL 248

Query: 92  HSINRMGEDVSRTILSLIDTSEWMKKVATDIKTISEQAKQGVLEQERQTELAATAMTQMV 151
            +++ M   +  T++ + + S+ +   A ++  +++++ +G+  Q  + + AATA+ QM 
Sbjct: 249 MALSDMQGGLKSTLVEIANASDQLASAAEELSAVTDESSRGLTRQNDEIQQAATAVNQMT 308

Query: 152 STVQEVSQNAASTAQAADIAQNSAKHGDKIMGHIVNKINDMTTQIHQTKSVIEHLAADTN 211
           + V EV+ NA ST++A+  A   A+ G + +   V+ ++ M  +I+ +   +  LA    
Sbjct: 309 AAVDEVASNAVSTSEASRQATTEAEDGRQQVEQAVSGMSSMVVEINDSTQSVADLAGQVR 368

Query: 212 SISSIIETISQVAEQTNLLALNAAIESARAGEHGRGFAVVADEVRNLAKRTSEATAEIQQ 271
            I  +I+ I  +A+QTNLLALNAAIE+ARAGE GRGFAVVADEVR LA RT  +T +I++
Sbjct: 369 EIGKVIDVIRGIADQTNLLALNAAIEAARAGEQGRGFAVVADEVRALAHRTQISTVDIEK 428

Query: 272 QITALQKGAQQGVEVMLKNVTIADETALMVEQAHKSLGEIVTHVESITDMSHQIATASEE 331
            I  +Q GA   V  M K++T A+ T  + + A ++L  I   V  I + +  IA+ASEE
Sbjct: 429 MIGDVQTGADDAVAAMNKSLTWANNTQTLAQNAGEALQRITASVAKINERNLVIASASEE 488

Query: 332 QHAVAEEINKNISAMAELALKNAHHTNLTNLSSLKVYNMSQEIGSLLHRFHV 383
           Q  VA E+++N+  + +L+ + A   + TN SS  +  ++     L+ +F +
Sbjct: 489 QAQVAREVDRNLLNIQDLSTQTAAGAHQTNASSQDLSRLATSFNVLVSKFQL 540