Pairwise Alignments

Query, 529 a.a., methyl-accepting chemotaxis protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 638 a.a., putative methyl-accepting chemotaxis protein from Pseudomonas putida KT2440

 Score =  222 bits (565), Expect = 4e-62
 Identities = 128/348 (36%), Positives = 209/348 (60%), Gaps = 1/348 (0%)

Query: 37  LATLCLIALAVILIFNINK-LIRHLRQLERAAHHLGEGDLSYQLDEKDAGVFNSVVHSIN 95
           +AT+  +AL ++  + I + +I  LRQ  RAA  +  GDL+  L  +       +  S++
Sbjct: 291 VATVLALALGLLAAWAITRQIIIPLRQTLRAAERVASGDLTQSLQVQRRDELGQLQASMH 350

Query: 96  RMGEDVSRTILSLIDTSEWMKKVATDIKTISEQAKQGVLEQERQTELAATAMTQMVSTVQ 155
           RM + +   I  + D    +   A ++  ++EQ   GV  Q+ +T+  ATAM QM +TV 
Sbjct: 351 RMTQGLRELIGGIGDGVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATVH 410

Query: 156 EVSQNAASTAQAADIAQNSAKHGDKIMGHIVNKINDMTTQIHQTKSVIEHLAADTNSISS 215
           EV++NA   ++AA +A   A+ GD+++G  V +I  + +++  +   +  L  +++ I S
Sbjct: 411 EVARNAEQASEAALMADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIGS 470

Query: 216 IIETISQVAEQTNLLALNAAIESARAGEHGRGFAVVADEVRNLAKRTSEATAEIQQQITA 275
           +++ I  VA+QTNLLALNAAIE+ARAGE GRGFAVVADEVR+LA+RT ++T EI++ I  
Sbjct: 471 VLDVIKSVAQQTNLLALNAAIEAARAGEAGRGFAVVADEVRSLAQRTQQSTEEIEELIAG 530

Query: 276 LQKGAQQGVEVMLKNVTIADETALMVEQAHKSLGEIVTHVESITDMSHQIATASEEQHAV 335
           LQ G Q+   VM  +  + D +  +  +A  SL  I   V SI  M+ QIATA+EEQ AV
Sbjct: 531 LQSGTQRVASVMDNSRQLTDSSVELTRRAGSSLETITRTVSSIQAMNQQIATAAEEQTAV 590

Query: 336 AEEINKNISAMAELALKNAHHTNLTNLSSLKVYNMSQEIGSLLHRFHV 383
           AEEIN+++  + +++ + +  +  T  SS+++  +   +  L+ RF +
Sbjct: 591 AEEINRSVMNVRDISDQTSAASEETASSSVELARLGTHLQGLVGRFRL 638



 Score = 41.6 bits (96), Expect = 9e-08
 Identities = 54/272 (19%), Positives = 101/272 (37%), Gaps = 43/272 (15%)

Query: 126 SEQAKQGVLEQ------------ERQTE-------------------------LAATAMT 148
           SEQA Q ++EQ              QTE                         LAA A+T
Sbjct: 249 SEQALQRMVEQGTVLLQASQMMTASQTEVRDAAAAQAKTLLTVATVLALALGLLAAWAIT 308

Query: 149 QMVSTVQEVSQNAASTAQAADIAQNSAKHGDKIMGHIVNKINDMTTQIHQTKSVIEHLAA 208
           + +      +  AA    + D+ Q+        +G +   ++ MT  +   + +I  +  
Sbjct: 309 RQIIIPLRQTLRAAERVASGDLTQSLQVQRRDELGQLQASMHRMTQGL---RELIGGIGD 365

Query: 209 DTNSISSIIETISQVAEQTNLLALNAAIESARAGEHGRGFAVVADEVRNLAKRTSEATAE 268
               I+S  E +S V EQT+    N  +E+ +             EV   A++ SEA   
Sbjct: 366 GVTQIASAAEELSAVTEQTSAGVNNQKVETDQVATAMNQMTATVHEVARNAEQASEAALM 425

Query: 269 IQQQITALQKGAQQGV---EVMLKNVTIADETALMVEQAHKSLGEIVTHVESITDMSHQI 325
             QQ     +   + V   E +   V  + E   +++     +G ++  ++S+   ++ +
Sbjct: 426 ADQQAREGDRVVGEAVAQIERLASEVVNSSEAMNLLKTESDKIGSVLDVIKSVAQQTNLL 485

Query: 326 ATASEEQHAVAEEINKNISAMAELALKNAHHT 357
           A  +  + A A E  +  + +A+     A  T
Sbjct: 486 ALNAAIEAARAGEAGRGFAVVADEVRSLAQRT 517