Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., Tyrosine recombinase XerC from Pseudomonas putida KT2440

 Score = 79.0 bits (193), Expect = 1e-19
 Identities = 78/279 (27%), Positives = 124/279 (44%), Gaps = 17/279 (6%)

Query: 6   AYALYLSRLAPNSQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQAMQIRALLIHEQWS 65
           AY  +L      S+ +     R + +++ + +E       ++  QQ  Q+ A L H   S
Sbjct: 7   AYCAHLRNERQVSEHTSQGYRRDLEKVIAYCEEHGIADWQALQIQQLRQLIARLHHHGQS 66

Query: 66  ARSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLALL 125
            RS+ R ++A++ + +    +    + Q    N ++  K        L  ++  +LL   
Sbjct: 67  PRSLARLLSAVRGLYRY---LNREGLCQHDPANGLSAPKGERRLPKVLDTDRALQLLDG- 122

Query: 126 SKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFLPD 185
               D    R  AI  LF  +GLR SEL  L L   D A   ++V+ GKG K+R+L +  
Sbjct: 123 GVDDDFIARRDQAILELFYSSGLRLSELTNLDLDHLDLAAGLVQVL-GKGGKARVLPVGR 181

Query: 186 WVEQHVIAWLNVRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVK----DKLGDIGVVG 241
              + + AW  +R    G      R   I      +S  A+   VK     +LG      
Sbjct: 182 KAREALQAWYRLR----GIGNPRDRAVFITRQGNRISPRAVRLRVKVAGERELGQ----H 233

Query: 242 ASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280
             PH LR +F + +LE + D+  V++M GHADISTT IY
Sbjct: 234 LHPHMLRHSFASHVLESSQDLRAVQEMLGHADISTTQIY 272