Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 69.3 bits (168), Expect = 1e-16
 Identities = 71/285 (24%), Positives = 130/285 (45%), Gaps = 31/285 (10%)

Query: 10  YLSRLAPNSQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQAMQIRALLIHEQW----- 64
           YL      S+ S+ +  R + +L+D+ D   G Q++  + + A+ +R  L   +W     
Sbjct: 13  YLKLEKSLSRHSVEAYERDVRKLVDFMDAK-GLQVAPEDMKPAI-LRDFL---EWINELG 67

Query: 65  -SARSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLA 123
            +  S  R ++ I++  K   +    DM Q    ++I   K      + L+  ++ +LL+
Sbjct: 68  MTPHSQARTLSGIRAFYKFLIM---EDMMQTDPTDTIEAPKLDRKLPDTLAFHEIEQLLS 124

Query: 124 LLSKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFL 183
            +       G R  A+      +GLR SEL  L +++  +    +K+ +GKG K R++ +
Sbjct: 125 AIDLSTPE-GTRNRAMLETLYSSGLRVSELLDLRISNLYADAGFLKI-SGKGEKERLVPI 182

Query: 184 PDWVEQHVIAW-------LNVRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVKDKLGD 236
                +H+  +       LN++K     L  + R          +SR  ++ ++KD    
Sbjct: 183 GRDALKHIQLYRDGIRCHLNIKKGNEDILFLNRRGA-------KMSRVMVFTIIKDLTAK 235

Query: 237 IGVVGA-SPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280
            G+    SPH  R +F T L+E   D+  V++M GH  I+TT IY
Sbjct: 236 AGIQKTVSPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIY 280