Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Pectobacterium carotovorum WPP14

 Score = 75.9 bits (185), Expect = 1e-18
 Identities = 75/282 (26%), Positives = 128/282 (45%), Gaps = 25/282 (8%)

Query: 8   ALYLSR-LAPNSQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQAMQIRALL---IHEQ 63
           AL+L R LA N+  S    +R++A+   W    +    + +   Q++ ++A L   +   
Sbjct: 15  ALWLERNLAENTLASYRLDLRTLAE---W----VAHHENGLLQAQSLDLQAFLADRVEGG 67

Query: 64  WSARSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLA 123
           + A S  R ++A++   +    +    ++       +++ K        LS  QV  LL 
Sbjct: 68  YKATSSARLLSAMRRFFQY---LYREKLRSDDPSAVLSSPKLPQRLPKDLSEAQVDALLN 124

Query: 124 LLSKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFL 183
             S  Q    LR  A+  +   TGLR SEL +LT++D       ++V+ GKGNK R++ L
Sbjct: 125 APSIEQPLE-LRDKAMLEVLYATGLRVSELVSLTMSDVSLRQGVVRVL-GKGNKERLVPL 182

Query: 184 PDWVEQHVIAWLNVRKMQLGPLICHCRTTGIIV---HYRPVSRDALYRLVKDK--LGDIG 238
            +      + W+        P + + +T  ++      R ++R   +  +K    L  I 
Sbjct: 183 GE----EAVYWIEYYLEHGRPWLLNGQTLDVLFPSSRARQMTRQTFWHRIKHYAVLASID 238

Query: 239 VVGASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280
               SPH LR  F T LL    D+  V+ + GH+D+STT IY
Sbjct: 239 SEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 280