Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Serratia liquefaciens MT49

 Score = 77.0 bits (188), Expect = 5e-19
 Identities = 83/286 (29%), Positives = 130/286 (45%), Gaps = 33/286 (11%)

Query: 8   ALYLSR-LAPNSQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQAMQIRALL---IHEQ 63
           AL+L R LA N+   +AS    +  L+ W    + +Q  S+   QA+ ++A L   +   
Sbjct: 15  ALWLERNLAENT---LASYRLDLQALVAW----LNQQNISLVKAQALDLQAFLAERVEGG 67

Query: 64  WSARSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLA 123
           + A S  R ++A++ + +    +   +M+       +A+ K        LS  QV  LL 
Sbjct: 68  YKATSSARLLSAMRRLFQY---LYRENMRTDDPTALLASPKLPQRLPKDLSEAQVDALLQ 124

Query: 124 LLSKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFL 183
                Q    LR  A+  +   TGLR SEL  LT++D       ++V+ GKGNK R++ L
Sbjct: 125 APCVDQPLE-LRDKAMLEVLYATGLRVSELVGLTISDVSLRQGVVRVI-GKGNKERLVPL 182

Query: 184 PD----WVE---QHVIAWLNVRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVKDK--L 234
            +    W+E   +H   W+ V    L  L    R        + ++R   +  +K    L
Sbjct: 183 GEEAVYWIENYLEHGRPWM-VNGQALDVLFPSNRC-------QQMTRQTFWHRIKHYAIL 234

Query: 235 GDIGVVGASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280
             I     SPH LR  F T LL    D+  V+ + GH+D+STT IY
Sbjct: 235 AGIDSERLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 280