Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 298 a.a., Tyrosine recombinase XerD from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 72.0 bits (175), Expect = 2e-17
 Identities = 74/279 (26%), Positives = 123/279 (44%), Gaps = 19/279 (6%)

Query: 8   ALYLSR-LAPNSQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQAMQIRALLIHEQWSA 66
           AL+L R LA N+   +++  R ++ ++ W     GK L++        + A  +   + A
Sbjct: 14  ALWLERNLAENT---LSAYRRDLSMVVAWLHHR-GKTLATAQADDLQTLLAERVEGGYKA 69

Query: 67  RSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLALLS 126
            S  R ++A++   +        +    A +   A+ K        LS  QV +LL    
Sbjct: 70  TSSARLLSAMRRFFQHLYREKYREDDPSAQL---ASPKLPQRLPKDLSEAQVERLLQAPL 126

Query: 127 KRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFLPDW 186
             Q    LR  A+  +   TGLR SEL  LT++D       ++V+ GKGNK R++ L + 
Sbjct: 127 IDQPLE-LRDKAMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI-GKGNKERLVPLGE- 183

Query: 187 VEQHVIAWLNVRKMQLGPLICHCRTTGIIV---HYRPVSRDALYRLVKDK--LGDIGVVG 241
                + WL        P + +  +  ++      + ++R   +  +K    L  I    
Sbjct: 184 ---EAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEK 240

Query: 242 ASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280
            SPH LR  F T LL    D+  V+ + GH+D+STT IY
Sbjct: 241 LSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 279