Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 302 a.a., tyrosine recombinase XerC from Dickeya dianthicola 67-19

 Score = 73.6 bits (179), Expect = 6e-18
 Identities = 71/288 (24%), Positives = 127/288 (44%), Gaps = 31/288 (10%)

Query: 4   ATAYALYLS---RLAPNSQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQAMQIRALLI 60
           A A+  YL    +L+P +Q S A Q++ I  ++          ++      A  +RA++ 
Sbjct: 11  AEAFLRYLRVERQLSPLTQSSYAHQLQVIIDMLS------ASGIADWQALDAAGVRAVVA 64

Query: 61  HEQ---WSARSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQ 117
             +    +A S+ + ++A++S +      GE           +   K G H    +  ++
Sbjct: 65  RSKRAGLNAASLAQRLSALRSFLDWLVGRGELKANPA---RGVPAPKAGRHLPKNMDVDE 121

Query: 118 VTKLLALLSKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNK 177
           V++LL +     D   +R  A+  +  G GLR +EL  L     D  +  + V+ GKG+K
Sbjct: 122 VSRLLDI--DLSDPLAVRDRAMLEVMYGAGLRLAELVGLDCGHVDLDSGEVWVM-GKGSK 178

Query: 178 SRILFLPDWVEQHVIAWLNVRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVKDKLGDI 237
            R L +       +  WL +R +            G  V    + +    R V+ +  + 
Sbjct: 179 ERKLPIGATAVTWLRHWLAIRDIYA--------PEGEAVFISSLGKRISMRNVQKRFAEW 230

Query: 238 GVVGA-----SPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280
           GV        +PH LR +F T +LE + D+  V+++ GHA++STT IY
Sbjct: 231 GVKQGVNSHVNPHKLRHSFATHMLESSGDLRAVQELLGHANLSTTQIY 278