Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 299 a.a., site-specific tyrosine recombinase XerD from Dickeya dadantii 3937

 Score = 78.6 bits (192), Expect = 2e-19
 Identities = 80/282 (28%), Positives = 126/282 (44%), Gaps = 25/282 (8%)

Query: 8   ALYLSR-LAPNSQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQAMQIRALL---IHEQ 63
           AL+L R LA N+  S  + +RS+A   DW    +    SS+   Q   ++  L   +   
Sbjct: 15  ALWLERNLAENTLSSYRNDLRSLA---DW----LAHHDSSLLQAQPSDLQDFLAERLEGG 67

Query: 64  WSARSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLA 123
           + A S  R ++A++ + +      +      A ++S    K        L+  QV  LLA
Sbjct: 68  YKATSSARLLSAMRRLFQYLYREKQRPDDPSAPLSS---PKLPQRLPKDLTEAQVEALLA 124

Query: 124 LLSKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFL 183
                Q    LR  A+  L   TGLR SEL  LT++D       ++V+ GKGNK R++ L
Sbjct: 125 APVTDQPIE-LRDKAMLELLYATGLRVSELVGLTISDVSLRQGVVRVI-GKGNKERLVPL 182

Query: 184 PDWVEQHVIAWLNVRKMQLGPLICHCRTTGIIV---HYRPVSRDALYRLVKD--KLGDIG 238
            +      + WL        P + + +T  ++      + ++R   +  +K    L  I 
Sbjct: 183 GE----EAVYWLEQYLEYSRPWLLNGQTLDVLFPSNRAQQMTRQTFWHRIKHYATLASID 238

Query: 239 VVGASPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280
               SPH LR  F T LL    D+  V+ + GH+D+STT IY
Sbjct: 239 SNKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIY 280