Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 294 a.a., Site-specific recombinase XerD from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 72.4 bits (176), Expect = 1e-17
 Identities = 60/223 (26%), Positives = 97/223 (43%), Gaps = 6/223 (2%)

Query: 59  LIHEQWSARSINRAMTAIKSIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQV 118
           L+ +  SA ++NR M  ++S  K     GE        + ++   K         + +Q 
Sbjct: 58  LVEQGLSATTVNRKMATLRSFYKFLLRSGEITKDPTYKLRALKTSKKLPEFVQESTMDQ- 116

Query: 119 TKLLALLSKRQDTYGLRTLAIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKS 178
             LL  L       G R   +      TG+R SEL  LT  D D    T+KV  GK  K 
Sbjct: 117 --LLNDLEYEAGFEGQRDKMVMEFLYLTGVRLSELIGLTWKDIDIQGKTVKVY-GKRKKQ 173

Query: 179 RILFLPDWVEQHVIAWLNVRKMQLGPLICHCRTTGIIVHYRPVSRDALYRLVKDKLGDIG 238
           RI+ L + + +++I++    K      +       + +  +      +YR+V+  L    
Sbjct: 174 RIIPLTNTLIENIISYKKDFKETFSN-VNESDYFIVTISKKQAYPMIIYRIVRKYLDLFA 232

Query: 239 VVGA-SPHDLRRTFITRLLEQNVDINTVRQMAGHADISTTTIY 280
                SPH LR TF T LL +  D+N V+ + GHA+++ T +Y
Sbjct: 233 QTSKRSPHLLRHTFATHLLNKGADLNAVKDLLGHANLAATQVY 275