Pairwise Alignments

Query, 310 a.a., site-specific recombinase, phage integrase family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 298 a.a., site-specific tyrosine recombinase from Escherichia coli BL21

 Score = 73.6 bits (179), Expect = 6e-18
 Identities = 67/268 (25%), Positives = 118/268 (44%), Gaps = 15/268 (5%)

Query: 18  SQRSIASQMRSIAQLMDWPDEVIGKQLSSINYQQAMQIRALLIHEQWSARSINRAMTAIK 77
           ++ ++ +  R ++ +++W     G  L++        + A  +   + A S  R ++A++
Sbjct: 22  AENTLNAYRRDLSMMVEWLHHR-GLTLATAQSDDLQALLAERLEGGYKATSSARLLSAVR 80

Query: 78  SIVKVAALMGEADMQQVAHINSIANMKHGAHQGNPLSAEQVTKLLALLSKRQDTYGLRTL 137
            + +        +    AH+   A+ K        LS  QV +LL      Q    LR  
Sbjct: 81  RLFQYLYREKFREDDPSAHL---ASPKLPQRLPKDLSEAQVERLLQAPLIDQPLE-LRDK 136

Query: 138 AIFALFLGTGLRRSELAALTLADYDSATSTIKVVAGKGNKSRILFLPDWVEQHVIAWLNV 197
           A+  +   TGLR SEL  LT++D       ++V+ GKGNK R++ L +      + WL  
Sbjct: 137 AMLEVLYATGLRVSELVGLTMSDISLRQGVVRVI-GKGNKERLVPLGE----EAVYWLET 191

Query: 198 RKMQLGPLICHCRTTGIIV---HYRPVSRDALYRLVKDK--LGDIGVVGASPHDLRRTFI 252
                 P + +  +  ++      + ++R   +  +K    L  I     SPH LR  F 
Sbjct: 192 YLEHGRPWLLNGVSIDVLFPSQRAQQMTRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFA 251

Query: 253 TRLLEQNVDINTVRQMAGHADISTTTIY 280
           T LL    D+  V+ + GH+D+STT IY
Sbjct: 252 THLLNHGADLRVVQMLLGHSDLSTTQIY 279