Pairwise Alignments

Query, 161 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 161 a.a., YajQ family cyclic di-GMP-binding protein from Pseudomonas fluorescens SBW25

 Score =  148 bits (373), Expect = 5e-41
 Identities = 77/163 (47%), Positives = 113/163 (69%), Gaps = 4/163 (2%)

Query: 1   MPSFDIVSEVDEVELRNAVENSRRELSGRFDFRGKDASIDYKDHVVT--LTAEDDFQCKQ 58
           MPSFD+VSE+D+ E+ NAVEN+ +EL  R+D +GK  S ++K+  +T  LTAE DFQ + 
Sbjct: 1   MPSFDVVSELDKHEVTNAVENAVKELDRRYDLKGK-GSFEFKEKELTVNLTAEADFQLEA 59

Query: 59  LVDILRTQLSKRNVEPSTMDVDEKSVHSGKTFSLKVRFKQGIETDIAKKIVKMVKDSKIK 118
           +++IL+  L KR ++   +++ + +  SGK    +   K+GI+ ++AKKIV  VKD+K+K
Sbjct: 60  MIEILKLSLVKRKIDAQCLEIKD-AYASGKLMKQEAVLKEGIDKELAKKIVAHVKDAKLK 118

Query: 119 VQSQIQGDTVRVTGKARDDLQAVMALVRQADLGQPFQFNNFRD 161
           VQ+ IQG+ VR+TGK RDDLQ  +A +R      P QFNNFRD
Sbjct: 119 VQAAIQGEQVRITGKKRDDLQEAIAALRAKTFDMPLQFNNFRD 161