Pairwise Alignments

Query, 465 a.a., UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 484 a.a., UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8) from Kangiella aquimarina DSM 16071

 Score =  162 bits (410), Expect = 2e-44
 Identities = 132/472 (27%), Positives = 230/472 (48%), Gaps = 54/472 (11%)

Query: 3   VHILGICGTFMGGLALLARAKGHRVTGSDANVYPPMSTQLEEQGIELIQGFDPSQLGDAG 62
           VH +GI G  M G+A +    G++V+GSD      ++ +L+  G ++  G     + D  
Sbjct: 20  VHFIGIGGAGMSGIAEVLLNLGYQVSGSDLRE-SKVTERLKTLGADIFIGHRSDNIRDV- 77

Query: 63  SYPDIVVIGNAMSRGNPCVEAVLNLGIPYTSGPQFLVDHILPERWVLAVSGTHGKTSTSS 122
              ++VV   A+ + NP +EA     IP     + L + ++  R  +AV+GTHGKT+T+S
Sbjct: 78  ---NVVVASTAIPKTNPELEAAREHRIPVVPRAEMLAE-LMRFRHGVAVAGTHGKTTTTS 133

Query: 123 MLAWILEDCGYQPGFLIGGVPQNFGVSARLGESAFFVVEADEYDSAFFDKRSKFVHYHPR 182
           ++A I  + G  P F+IGG+  + G +ARLG S FF+ EADE D++       F+H  P 
Sbjct: 134 LIASIFAEGGLDPTFVIGGLLNSAGSNARLGTSRFFIAEADESDAS-------FLHLQPM 186

Query: 183 TLVINNLEFDHADIF-ADLAAIQKQFHHQIRTVPGQGKVIWPADSHAVKQ--------TI 233
             V+ N+E DH D +  D   ++  F   +  +P  G  +   D   V++        T+
Sbjct: 187 VSVVTNIEADHMDTYGGDFKNLENNFIDFLHNLPFYGLAVLCIDDKTVQEIMPRITRPTV 246

Query: 234 DMGCWSEQETYHSSEVTKGW---HAKALSDDCHEFEVFFDGQSQGVLDWALIGQHNIENA 290
             G +SE     + E T+     H K +  D HE E+         +   L G+HN++NA
Sbjct: 247 TYG-FSENADVRAIEFTQSGTKSHFKVIRRD-HEGEL--------EITLNLPGRHNVQNA 296

Query: 291 VMAIAAARHVGVAPSAAIDALARFVPPKRRLELLD--TVNG--VSVYDDFAHHPTAIATT 346
           + AIA A   GV+ ++   ALA F    RR ++     V+G  +++ DD+ HHP+ +  T
Sbjct: 297 LAAIAVASEDGVSDASIQKALAEFGGIGRRFQMYGDFEVDGKTITLLDDYGHHPSEVMAT 356

Query: 347 IKGMRAKVGQTKITIVLEPRSNTMKSGVHKD----------TLAHSMLQADEAFLYQAD- 395
           I+ MR    + ++ +V +P   +    +++D           L   +  A E  +  AD 
Sbjct: 357 IEAMRRSWPERRLVMVYQPHRYSRTRDLYEDFSKVLSEVDALLLLEVYPAGEEPIPGADS 416

Query: 396 -TIDWNMKEAMEAAVIPVTVLHQIDDVVAKVAASAKPGDTIVVMSNGGFGGL 446
            ++  ++++  +   I V  + Q+ ++++ +    + GD +V    G  G L
Sbjct: 417 RSLCRSIRQRGKIEPIHVEKISQLPELLSNI---LQDGDVVVTQGAGNVGAL 465