Pairwise Alignments

Query, 390 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 363 a.a., AAA family ATPase from Dickeya dianthicola 67-19

 Score = 88.6 bits (218), Expect = 3e-22
 Identities = 104/401 (25%), Positives = 164/401 (40%), Gaps = 83/401 (20%)

Query: 2   LTTLAISNYRTLREIVLPLGRLNVVTGANGSGKSNLYKALRLLAQTAQGGVVNALALEGG 61
           L+ L I  Y+++    L +G LNV+ GANG+GKSN     RL+A      + + ++  GG
Sbjct: 10  LSKLMIEGYKSVERCELQMGSLNVLIGANGAGKSNFISFFRLIATLLDQRLQSLVSKAGG 69

Query: 62  LDSCFWAGPENLTKGMLAGDTPIEATVRQAPKRLK--LGFAGEDFSYLIELGLPKPDSTT 119
            D+    G                   R+    LK  L F    + + +E   P  D+  
Sbjct: 70  PDAMLHFG-------------------RKKTPHLKGELYFGNNGYKFELE---PTNDNRM 107

Query: 120 LFGLDPQIKREAIWNGAKYRPASVLVERRGPMVKSRSQDGQGWITLSAHLQSSDSIFTEL 179
           +F       REA+W                      +  G   + ++ H +S        
Sbjct: 108 MFS------REALW---------------------WNMSGDKGV-VAGHFESRAE----- 134

Query: 180 ADPERSPEVLKLRDSI-RAWRFYDHFRTDTDAPARRPQLGTATP--VLHHDGRDLPSAIQ 236
              E +  + K    I R WR Y HF  DT   AR  Q+        L  DG +L + + 
Sbjct: 135 ---EHNTGIKKYTLPIMRRWRVY-HFH-DTSESARVKQIHRINDNDYLREDGANLAAFLY 189

Query: 237 TIFEIGDKSAFDH---------AVSDAFPGAKVRITPQAGGILQLEFQQQGLLRPLYASE 287
            +     K+   H          V+  F    +R T      +QLE+ ++    P  A+E
Sbjct: 190 RL----QKNHSAHYKRIVKSIQMVAPFFGDFYLRPTSDNPETIQLEWTEKEQDIPFKANE 245

Query: 288 LSDGTLRYLLLIAALLTPR--PPELMVLNEPETSLHPDLLPALARLIAKASEVCQLWVVS 345
           LSDG+LR++LL   LL P    P  ++++EPE  LHP  +  LA LI  AS   QL + +
Sbjct: 246 LSDGSLRFILLATVLLQPEEYKPSAIIVDEPELGLHPYAIAVLAELIKTASHEHQLIIST 305

Query: 346 HANRLINALNQFEECNTLALDKTLGQTQILGQDLLNTPSWL 386
            +  L+   N+F+  + + +DK  G +     +  +   WL
Sbjct: 306 QSVELV---NEFDAEDLIVVDKKGGASTFKRLEADSLEEWL 343