Pairwise Alignments

Query, 390 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 374 a.a., AAA family ATPase from Dickeya dadantii 3937

 Score = 80.1 bits (196), Expect = 1e-19
 Identities = 84/361 (23%), Positives = 152/361 (42%), Gaps = 53/361 (14%)

Query: 2   LTTLAISNYRTLREIV-LPLGRLNVVTGANGSGKSNLYKALRLLAQTAQGGVVNALALEG 60
           L  L I  ++++R +V   LG LNV+ G NG+GKSNL    ++L     G +   +   G
Sbjct: 5   LDKLTIKGFKSIRSLVDFELGSLNVIVGGNGAGKSNLIAFFKMLRALIDGNLNRYVRDSG 64

Query: 61  GLDSCFWAGPENLTKGMLAGDTPIEATVRQAPKRLKLGFAGEDFSYLIELGLPKPDSTTL 120
           G     + G   +T+ M                  +  F    F + +   +P P ++  
Sbjct: 65  GAGDLLFNG-RKITQKM----------------EFETRFGTRGFRFKL---VPTPANSCA 104

Query: 121 FGLDPQIKREAIWNGAKYRPASVLVERRGPMVKSRSQDG--QGWITLSAHLQSSDSIFTE 178
                 I+ EA + G                   +  DG   GW  L      +  + TE
Sbjct: 105 ------IEDEARYYGG-----------------GQKTDGGKTGWWLLGDSHDGTSLMVTE 141

Query: 179 LADPERSPEVLK-LRDSIRAWRFYDHFRTDTDAPARRPQLGTATPVLHHDGRDLPSAIQT 237
           + D +      + + D+I +W+ Y    T + A  R  ++     VL  D  ++   +  
Sbjct: 142 VKDKKLDARFSQPVYDAIASWQIYHFHDTGSTAGMRNYEIVQDNRVLRTDAANIGPFLLK 201

Query: 238 IFEI--GDKSAFDHAVSDAFPGAK-VRITPQAGGI---LQLEFQQQGLLRPLYASELSDG 291
           + +    + +A  +A+    P      + P+  G    + + + Q+G   P+    LSDG
Sbjct: 202 LKQHHPAEYTAIVNAIRLVTPFFDDFLLEPRQSGDREEVNISWTQKGSDYPMQPYHLSDG 261

Query: 292 TLRYLLLIAALLTPRPPELMVLNEPETSLHPDLLPALARLIAKASEVCQLWVVSHANRLI 351
           ++R++ L  ALL P  P  ++++EPE  LHP  +  LA LI +A++  Q+ + + +  LI
Sbjct: 262 SIRFICLATALLQPVLPATIIIDEPELGLHPAAIVILAELIQQAAQRTQVLIATQSPALI 321

Query: 352 N 352
           +
Sbjct: 322 D 322