Pairwise Alignments

Query, 324 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 723 a.a., EAL domain-containing protein from Dickeya dadantii 3937

 Score =  135 bits (340), Expect = 3e-36
 Identities = 82/222 (36%), Positives = 113/222 (50%), Gaps = 5/222 (2%)

Query: 1   MQLPPIPDNELQRLSTLKALNILDTNAEERFDRITRLTRRIFALPICVVTLVDASRQWFK 60
           M   P   +E  RL  L+   I    ++  FD +  L   +F +PI +++LV+  RQ F 
Sbjct: 1   MSRAPANKDEKSRLEALREYGISKPLSDPGFDNLINLAANVFNVPIVLISLVEEERQLFA 60

Query: 61  SCQGLEVTETSRDISFCGHAINHDGIFIVNDAQMDPRFHDNPLVTQSPHIRFYAGYPLTI 120
           +  G+ V ETSRD SFC HAI    I ++ D + DPRFHDNPLVT  PHIRFYAG PL  
Sbjct: 61  ASVGMSVCETSRDESFCAHAILKKRIMVIPDTRKDPRFHDNPLVTGEPHIRFYAGIPLRT 120

Query: 121 RGEYRVGTLCLIGNEPR-EFSADDIETLTDLGQMVEAELLSISLNTLDPLTMISNRRGFE 179
              + +G LC+I N+PR   SA D   L D   +V  +L    +  LD     S  R FE
Sbjct: 121 PSGFPIGALCIIDNKPRSSLSARDAHNLQDFAALVMDKL---EMRRLDLARRASQAR-FE 176

Query: 180 QLAFQSLASCRRTNSQAALVFFDLDFFKELNDSFGHRKGDQV 221
            +A  S  +    N +  + F++    K L  S     G+ +
Sbjct: 177 SIAESSPDAILCVNDRGTITFWNESAEKMLEYSRDQIVGEHI 218



 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 54/154 (35%), Positives = 83/154 (53%), Gaps = 10/154 (6%)

Query: 167 DPLTMISNRRGFEQLAFQSLASCRRTNSQAALVFFDLDFFKELNDSFGHRKGDQVLYDFA 226
           DPLT ++NR     L   +L    +     A++  DLD FK++NDS GH  GD++L   A
Sbjct: 299 DPLTGLANRT----LLTSTLEQVLKNGEPTAIMIIDLDGFKDINDSLGHASGDEILSSVA 354

Query: 227 HLLMAAFRESDVIARLGGDEFVVLLSFVKIDAVHVAIERFQSLLEQYNQQHP---QQPTL 283
             L       D++AR+GGDEF +LL   + D   VA +  + ++   +Q  P   +Q   
Sbjct: 355 KRLQGNVCSGDLVARMGGDEFAILLP-KQNDESQVA-KLAEKIIYDISQAVPVDDKQINT 412

Query: 284 VSSIGVAHWSPELDINLEDLLDAADRAMYQDKAE 317
            +SIG+  + P     ++DLL +AD A+YQ KA+
Sbjct: 413 SASIGLVMY-PAHGTTVQDLLTSADLALYQAKAD 445