Pairwise Alignments

Query, 324 a.a., GGDEF domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 342 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  129 bits (323), Expect = 1e-34
 Identities = 88/325 (27%), Positives = 150/325 (46%), Gaps = 18/325 (5%)

Query: 7   PDNELQRLSTLKALNILDTNAEERFDRITRLTRRIFALPICVVTLVDASRQWFKSCQGLE 66
           PD E++RL  ++++        +    I++L + +F +    V ++D          GL+
Sbjct: 8   PDREVERLVAVRSVVAFKNAETDELRAISQLAQGVFDVARAAVHILDEDWLHIAEQAGLQ 67

Query: 67  VTETSRDISFCGHAINHDGIFIVNDAQMDPRFHDNPLVTQSPHIRFYAGYPLTIRGEYRV 126
             E SRDI+ C   +    +  V+D  + P F   P V  SP +R YAG P+ +     V
Sbjct: 68  FQECSRDIAICDRVVVTQNVLTVSDLSVHPEFGWLPYVKGSPELRSYAGAPIELEPGLVV 127

Query: 127 GTLCLIGNEPREFSADDIETLTDLGQMVEAEL--------LSISLNTL------DPLTMI 172
           GT CL+    RE+S  +I+ L     +  A L        +S++   L      DPLT  
Sbjct: 128 GTFCLLDPNVREYSPAEIDNLRYFATLAGALLRLQKANFTMSLAARELRDAAMTDPLTGF 187

Query: 173 SNRRGFEQLAFQSLASCRRTNSQAALVFFDLDFFKELNDSFGHRKGDQVLYDFAHLLMAA 232
            NR+  + +    L +         +++ DLD FK +ND+ GH  GD+VL + A  +   
Sbjct: 188 YNRKALDAIVDLELGAALCERETFGVLYLDLDGFKAINDTLGHAAGDKVLVEAAARIRDV 247

Query: 233 FRESDVIARLGGDEFVVLLSFVKIDAVHVAIERFQSLLEQYNQQ-HPQQPTLVSSIGV-A 290
            R  D + R+GGDEF + +   +  +  V     + LLE + Q  H +   +++ + +  
Sbjct: 248 VRAEDTVVRMGGDEFAIFVP--RPMSASVIGSLAERLLEAFRQPFHVEGEDVLARLSIGG 305

Query: 291 HWSPELDINLEDLLDAADRAMYQDK 315
             +P+   +   LL + D A+YQ K
Sbjct: 306 AIAPQAGADRPTLLRSVDEALYQAK 330