Pairwise Alignments

Query, 319 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 311 a.a., putative sodium-dependent bicarbonate transporter from Pseudomonas sp. S08-1

 Score =  227 bits (578), Expect = 3e-64
 Identities = 134/308 (43%), Positives = 190/308 (61%), Gaps = 10/308 (3%)

Query: 3   DIVIAFFALGLLAGLVKSDLKVPPAIYETLSILLMLTLGLKGGMALHGHTQNLVFTELVA 62
           D V+ FF  GL+AGL+KS+LK+P A+YETLSI+L+L +GL GG+ L       +  +   
Sbjct: 2   DPVVLFFVFGLVAGLLKSELKLPAALYETLSIILLLAIGLHGGVELAEQASAQLLGQSGL 61

Query: 63  VVALGLLIPLALYPVLTRLVRLGRTDAISIAAHYGSVSAGTFAVVIAMVEKSGMTLRPET 122
           V+ LGL +PL  + VL R +R  R +A ++AAHYGSVSAGTFAVV+A +    +      
Sbjct: 62  VLLLGLGLPLLAF-VLLRGLRFDRINAAAVAAHYGSVSAGTFAVVVAFLVSREVAFESYM 120

Query: 123 TLYLVLLELPAIVVMLWLHRYLSAKQPLQATVPNTQQSSILHEALTSRGVVLLVGGVVIG 182
            L++ +LE+PAI+V + L + +S          +TQ   +  E    + ++LL+GG+VIG
Sbjct: 121 PLFVAILEIPAILVGIVLAKGISR---------DTQWRELGREIFLGKSIMLLLGGLVIG 171

Query: 183 WLYGPTGLAAISPVLLGGFKTLLALFLLEMGLVTAKVCLPLPLQQWRLLVFAAVTPFALA 242
            + G   +  + P+    FK +LA FLLEMGL+ +     L     RL VFA + P   A
Sbjct: 172 AVAGKEAIKPLEPLYTSMFKPVLAFFLLEMGLIASSQLGALKQFGLRLAVFALLMPLLGA 231

Query: 243 WCGIGVGLWLELPPGSILVLAGLSASASYIAAPAAIRAAIPEANIGLAMLASLGITFPVN 302
             G  +   ++L  G   +LA L+ASASYIA PAA+R A+PEAN  L++ ASLGITFP N
Sbjct: 232 LIGALLARGMDLSLGGTAMLATLAASASYIAVPAALRLALPEANPSLSLTASLGITFPFN 291

Query: 303 VLIGLPLY 310
           +LIG+PLY
Sbjct: 292 ILIGIPLY 299