Pairwise Alignments

Query, 304 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 355 a.a., L,D-transpeptidase family protein from Pectobacterium carotovorum WPP14

 Score =  398 bits (1022), Expect = e-115
 Identities = 194/299 (64%), Positives = 234/299 (78%), Gaps = 5/299 (1%)

Query: 10  LLTLVFP----SLSALATEYPLPSPKSRLVGENLYYTVPEGK-HTLEDIAAQFQLGLSNL 64
           + TLVF     S +A A  YPLP+  SRL+GEN+  TVPE     LE  A+QFQ+GLSNL
Sbjct: 6   IFTLVFAAAAFSQAAFAVVYPLPAANSRLIGENIDITVPEDSTQPLEHFASQFQMGLSNL 65

Query: 65  LEANPGVDPFLPKPGSKLLIPKQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVLPIGI 124
           +EANP  D +LP PGSK++IP QLILP+APREGIVIN AEMRLYYYPKG KTV VLPIGI
Sbjct: 66  MEANPDADVYLPIPGSKMVIPHQLILPDAPREGIVINSAEMRLYYYPKGSKTVVVLPIGI 125

Query: 125 GQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGLYALYI 184
           G++GKDTP NW TSVQRK+A PTWTPT ++  EYAARGE L  V+PAGPDNPMGLYALYI
Sbjct: 126 GELGKDTPINWTTSVQRKKAGPTWTPTAKMHAEYAARGETLQKVFPAGPDNPMGLYALYI 185

Query: 185 GNLYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPIGTRVQFVNQPIKATEEPDGK 244
           GNLYAIHGTNA+FGIGLRVS GCVRLR DDI++LF  VP+GTRVQF+N+P+KAT EPDG 
Sbjct: 186 GNLYAIHGTNANFGIGLRVSHGCVRLRADDIKYLFNNVPVGTRVQFINEPVKATVEPDGS 245

Query: 245 RYLAVHQPLSRTIAEFESNEPVALSLPKDIAKFIAKADTDSSMIKKLLDERTGVPAIIN 303
           RY+ VH PLSRT+ EF S+ P  +S+   ++K +A A  ++S + + +  R+G+P  IN
Sbjct: 246 RYVEVHNPLSRTVEEFHSDSPAPISMTPKVSKVLADASVNTSEVDQAIQRRSGMPTKIN 304