Pairwise Alignments

Query, 304 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 340 a.a., L,D-transpeptidase family protein from Pectobacterium carotovorum WPP14

 Score =  335 bits (859), Expect = 9e-97
 Identities = 168/291 (57%), Positives = 211/291 (72%), Gaps = 7/291 (2%)

Query: 17  SLSALATEYPLPSPKSRLVGENLYYTVPEGKHTLEDIAAQFQLGLSNLLEANPGVDPFLP 76
           S +A ATEYPLP P SRL+GEN+ YTVP    +LE IAA F++GL  ++EANPGVDP+LP
Sbjct: 18  STAAKATEYPLPPPNSRLIGENIAYTVPNDGRSLEAIAADFKIGLLGMMEANPGVDPYLP 77

Query: 77  KPGSKLLIPKQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDTPENWV 136
             GS + IP Q++LP+ PREGIV+N+AE+RLYYYPKGK TV V PIGIGQ+G++TP    
Sbjct: 78  TAGSTITIPTQMLLPDTPREGIVVNLAELRLYYYPKGKNTVIVYPIGIGQLGRNTP-LMT 136

Query: 137 TSVQRKRANPTWTPTPRIRKEY-AARGEILPAVWPAGPDNPMGLYALYI---GNLYAIHG 192
           TSV  KR NPTWTPT  IRK Y   +G  LPAV PAGPDNPMGL+AL +   G +Y +HG
Sbjct: 137 TSVSEKRENPTWTPTANIRKHYLEEQGIKLPAVVPAGPDNPMGLHALRLSAHGGVYLLHG 196

Query: 193 TNASFGIGLRVSQGCVRLRHDDIEHLFKTVPIGTRVQFVNQPIKATEEPDGKRYLAVHQP 252
           TNA FGIG+RVS GC+RLR DDI+ LF  VP+GTRVQ VN  IK + EPDGKRY+ VHQP
Sbjct: 197 TNADFGIGMRVSSGCIRLRPDDIKALFDNVPVGTRVQIVNDAIKTSVEPDGKRYVEVHQP 256

Query: 253 LSRTIAEFESNEPVALSLPKDIAKFIAKADTDSSMIKKLLDERTGVPAIIN 303
           LS+T  +     P+ L+      KF+  A+TDS  +   +  R+G+P +++
Sbjct: 257 LSKTDKDDPQTMPIPLTAKTQ--KFVKDAETDSKAVADAIVRRSGMPIVVS 305