Pairwise Alignments

Query, 304 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 321 a.a., L,D-transpeptidase YcfS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  295 bits (754), Expect = 1e-84
 Identities = 152/299 (50%), Positives = 204/299 (68%), Gaps = 6/299 (2%)

Query: 10  LLTLVFPSLSALATEYPLPSPKSRLVGENLYYTVPEGKHTLEDIAAQFQLGLSNLLEANP 69
           L   +  +L A A  +PLP P SRLVGEN ++ V +   +LE IA ++ +G   LL+ANP
Sbjct: 16  LTATIMLALPAQANTWPLPPPGSRLVGENKFHVVEDDGGSLEAIAKKYNVGFLALLQANP 75

Query: 70  GVDPFLPKPGSKLLIPKQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVLPIGIGQIGK 129
           G+DP++P+ GS L IP Q +LP+APREGIVIN+AE+RLYYY  GK TV V PIGIGQ+G 
Sbjct: 76  GIDPYVPRAGSVLTIPLQTLLPDAPREGIVINLAELRLYYYQPGKNTVTVYPIGIGQLGG 135

Query: 130 DT-PENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGLYALYI---G 185
           DT     VT++  KRANPTWTPT  IR  Y A+G  LPAV PAGPDNPMG +A+ +   G
Sbjct: 136 DTLTPTMVTTISDKRANPTWTPTANIRARYKAQGIDLPAVVPAGPDNPMGHHAIRLAAYG 195

Query: 186 NLYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPIGTRVQFVNQPIKATEEPDGKR 245
            +Y +HGTNA FGIG+RVS GC+RLR  DIE LF+ V  GT+V  +N PIKA+ EP G R
Sbjct: 196 GVYLLHGTNADFGIGMRVSSGCIRLRDGDIETLFRQVTPGTKVNIINTPIKASVEPGGVR 255

Query: 246 YLAVHQPLSRTIAEFESNEPVALSLPKDIAKFIAKADTDSSMIKKLLDERTGVPAIINQ 304
            + VHQPLS+ I +     P+ L+ P  +  F     TD+++++ +++ R+G+P  + +
Sbjct: 256 LVEVHQPLSKNIGDDPQVLPIVLNGP--MQAFKDAPQTDAAVMEHVMEVRSGMPVDVTR 312