Pairwise Alignments

Query, 304 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 334 a.a., hypothetical protein (NCBI) from Escherichia coli BW25113

 Score =  252 bits (643), Expect = 1e-71
 Identities = 142/308 (46%), Positives = 194/308 (62%), Gaps = 12/308 (3%)

Query: 3   MLRTTALLLTLV--FPSLSAL-ATEYPLPSPKSRLVGENLYYTVPEGKHTLEDIAAQFQL 59
           M R + L LTL+  F ++ A  A +YPLP   SRLVG+N  YTV EG   L+ IA +F  
Sbjct: 1   MKRASLLTLTLIGAFSAIQAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKNLQAIARRFDT 60

Query: 60  GLSNLLEANPGVDPFLPKPGSKLLIPKQLILPNAPREGIVINVAEMRLYYYPKGKKTVEV 119
               +LEAN  + P +PKPG+ + IP QL+LP+APR+GI++N+AE+RLYYYP G+  V+V
Sbjct: 61  AAMLILEANNTIAP-VPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQV 119

Query: 120 LPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGL 179
            PIGIG  G +TP    T V +K  NPTWTPT  IR+    RG  LP V PAGP+NP+G 
Sbjct: 120 YPIGIGLQGLETPV-METRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGR 178

Query: 180 YALYIGN---LYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPIGTRVQFVNQPIK 236
           YAL + +    Y IHGT+A   +GLRVS GC+R+   DI+ LF +V  GT V+ +N+P+K
Sbjct: 179 YALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVK 238

Query: 237 ATEEPDGKRYLAVHQPLSRTIAEFESN-EPVALSLPKDIAKFIAKADTDSSMIKKLLDER 295
            + EP+G RY+ VH+PLS   AE + N + +  +LP    +F      D  ++ K L  R
Sbjct: 239 YSVEPNGMRYVEVHRPLS---AEEQQNVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRR 295

Query: 296 TGVPAIIN 303
            G P  ++
Sbjct: 296 AGYPVSVS 303