Pairwise Alignments

Query, 304 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 365 a.a., L,D-transpeptidase family protein from Dickeya dadantii 3937

 Score =  404 bits (1039), Expect = e-117
 Identities = 198/304 (65%), Positives = 233/304 (76%), Gaps = 1/304 (0%)

Query: 1   MSMLRTTALLLTLVFPSLSALATEYPLPSPKSRLVGENLYYTVP-EGKHTLEDIAAQFQL 59
           MS+     L++     S +ALA  YPLP+P SRLVGEN+  T+P +    LE  AAQ+Q+
Sbjct: 1   MSIRAILTLVVAAAAFSQTALAVVYPLPAPNSRLVGENIQVTIPSDSTDALEHFAAQYQM 60

Query: 60  GLSNLLEANPGVDPFLPKPGSKLLIPKQLILPNAPREGIVINVAEMRLYYYPKGKKTVEV 119
           GLSNLLEANPG+D +LPKPGS + +P+QLILP+APREGIVIN AEMRLYYYPKG KTV V
Sbjct: 61  GLSNLLEANPGIDVYLPKPGSTMTVPQQLILPDAPREGIVINSAEMRLYYYPKGSKTVVV 120

Query: 120 LPIGIGQIGKDTPENWVTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGL 179
           LPIGIGQ+GKDTP NWVTSVQRK+  PTWTPT  +  EYAARGE LP V+PAGPDNPMGL
Sbjct: 121 LPIGIGQLGKDTPINWVTSVQRKKERPTWTPTAAMHAEYAARGEFLPQVYPAGPDNPMGL 180

Query: 180 YALYIGNLYAIHGTNASFGIGLRVSQGCVRLRHDDIEHLFKTVPIGTRVQFVNQPIKATE 239
           YALYIGNLYAIHGTNA+FGIGLRVS GCVRLR  DI++LF  VP+GTRVQF+N+P+KAT 
Sbjct: 181 YALYIGNLYAIHGTNANFGIGLRVSHGCVRLRDKDIKYLFDHVPVGTRVQFINEPVKATV 240

Query: 240 EPDGKRYLAVHQPLSRTIAEFESNEPVALSLPKDIAKFIAKADTDSSMIKKLLDERTGVP 299
           EPDG RY+ VH PLSRT  EF S+ PV L L   + K +A A    S + + L  R G+P
Sbjct: 241 EPDGSRYVEVHNPLSRTEEEFNSDTPVPLKLTPAVTKVLADASVSESTVNQALQNRIGMP 300

Query: 300 AIIN 303
             +N
Sbjct: 301 TKVN 304