Pairwise Alignments

Query, 304 a.a., LysM domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 320 a.a., L,D-transpeptidase linking Lpp to murein from Escherichia coli BL21

 Score =  289 bits (740), Expect = 5e-83
 Identities = 151/292 (51%), Positives = 198/292 (67%), Gaps = 6/292 (2%)

Query: 17  SLSALATEYPLPSPKSRLVGENLYYTVPEGKHTLEDIAAQFQLGLSNLLEANPGVDPFLP 76
           +L A A  +PLP   SRLVGEN ++ V     +LE IA ++ +G   LL+AN GVDP++P
Sbjct: 23  ALPAKANTWPLPPAGSRLVGENKFHVVENDGGSLEAIAKKYNVGFLALLQANLGVDPYVP 82

Query: 77  KPGSKLLIPKQLILPNAPREGIVINVAEMRLYYYPKGKKTVEVLPIGIGQIGKDT-PENW 135
           + GS L IP Q +LP+APREGIVIN+AE+RLYYYP GK +V V PIGIGQ+G DT     
Sbjct: 83  RAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIGIGQLGGDTLTPTM 142

Query: 136 VTSVQRKRANPTWTPTPRIRKEYAARGEILPAVWPAGPDNPMGLYALYI---GNLYAIHG 192
           VT+V  KRANPTWTPT  IR  Y A+G  LPAV PAGPDNPMG +A+ +   G +Y +HG
Sbjct: 143 VTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGPDNPMGHHAIRLAAYGGVYLLHG 202

Query: 193 TNASFGIGLRVSQGCVRLRHDDIEHLFKTVPIGTRVQFVNQPIKATEEPDGKRYLAVHQP 252
           TNA FGIG+RVS GC+RLR DDI+ LF  V  GT+V  +N PIK + EP+G R + VHQP
Sbjct: 203 TNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNIINTPIKVSAEPNGARLVEVHQP 262

Query: 253 LSRTIAEFESNEPVALSLPKDIAKFIAKADTDSSMIKKLLDERTGVPAIINQ 304
           LS  I +     P+ L+    +  F   A TD+ +++ ++D R+G+P  + +
Sbjct: 263 LSEKIDDDPQLLPITLN--SAMQSFKDAAQTDAEVMQHVMDVRSGMPVDVRR 312