Pairwise Alignments

Query, 336 a.a., sugar-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 318 a.a., D-ribose ABC transporter, substrate-binding component RbsB (from data) from Pseudomonas simiae WCS417

 Score = 59.3 bits (142), Expect = 1e-13
 Identities = 54/205 (26%), Positives = 95/205 (46%), Gaps = 17/205 (8%)

Query: 6   MLIIALGLLPISSVYGKEL---KLALVPK-----FYSVFFDQSKNGCIDAAAQIEGVECI 57
           +L  A   LP+SS +  +    K+ LV K     F+    D +K    + AA  + +   
Sbjct: 14  VLAAASAALPLSSAFADDAAKPKVGLVMKSLANEFFVTMQDGAKTYQKEHAADFDMITNG 73

Query: 58  YRGPEISSVRLQDQVINQLIDEGVDGIAVAVTQSKYLVENSLKRAKEVGIPIVTYDSDFD 117
            +    +S ++   ++NQ+I   V+ I +A   SK LV   LK+A + GI +V  D+  D
Sbjct: 74  IKNETDTSAQID--IVNQMILAKVNAIVIAPADSKALV-TVLKKASDAGIKVVNIDNRLD 130

Query: 118 ASINGDPKNFRLAYIGTDNFELGKSLGEELKKLRPNGGMLIMQSGRPDSPNLNLRLMGVR 177
             +    KN  + ++G DN +  K +G+ L K   +G  + +  G P + N   R  G +
Sbjct: 131 PDVLKS-KNLDIPFVGPDNRKGSKLVGDYLAKQLASGDKVGIIEGVPTTTNAQQRTAGYK 189

Query: 178 SALSGKKYDIPPGKLLNNEQGWTEV 202
            A+     D    K+++ + G  E+
Sbjct: 190 DAM-----DAAGMKIVSTQSGNWEI 209