Pairwise Alignments

Query, 336 a.a., sugar-binding protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 346 a.a., xylose ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score = 51.2 bits (121), Expect = 4e-11
 Identities = 58/260 (22%), Positives = 107/260 (41%), Gaps = 27/260 (10%)

Query: 39  QSKNGCIDAAAQIEGVECIYRGPEISSVRLQDQVINQLIDEGVDGIAVAVTQSKYLVENS 98
           ++    I AA    G + I    + S+ + Q   +  LI +G + + + + Q    +  +
Sbjct: 41  KTDEAAIKAALDKAGAKYISADAQSSAAK-QLTDVESLISQGANALII-LAQDSDAIGPA 98

Query: 99  LKRAKEVGIPIVTYDSDFDASINGDPKNFRLAYIGTDNFELGKSLGEELKKLRPNGGMLI 158
           +++A   GIP+V YD   +        N    YI  DN E+G+    E+ K++P G  + 
Sbjct: 99  VEKAVAEGIPVVGYDRLIE--------NKNAFYITFDNKEVGRLQAAEVFKVKPEGNYVF 150

Query: 159 MQSGRPDSPNLNLRLMGVRSALSGKKYDIPPGKLLNNEQGWTEVREPLFNFDQLSQAVKQ 218
           ++ G    PN +    G +  L   K  +  GK+ N  + +T+  +P         A K 
Sbjct: 151 IK-GSSSDPNADFLFAGQQEVL---KAAMSSGKIKNVGEAYTDGWKP-------ENAQKN 199

Query: 219 MESVMKGKPVKADSFIAVGGWAQNNDALYRDMIAPFQEKINDKEVVIVMTDTSPEQLTML 278
           ME  +     K D+ +A      +ND      IA    +     V +   D     L  +
Sbjct: 200 MEQFLTKNNNKVDAVVA------SNDGTAGGAIAALAAQGMAGSVPVSGQDADFAALNRV 253

Query: 279 KDNLAHINVGQNPYEMGRQA 298
                 ++V ++  E+G++A
Sbjct: 254 ALGTQTVSVWKDSRELGKEA 273