Pairwise Alignments

Query, 419 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 376 a.a., RND transporter from Pseudomonas simiae WCS417

 Score = 53.9 bits (128), Expect = 8e-12
 Identities = 71/272 (26%), Positives = 114/272 (41%), Gaps = 54/272 (19%)

Query: 151 LDMAKVDLEAAERERRRGELLIQSKLIGQIDYEKGKDDLHKAKLKFEHALQEVALTKDTL 210
           L+ A+ DL  A+ +  RG     S+L+G     KG+ D   A+L+               
Sbjct: 109 LETAQADLGLAQLDYGRG-----SQLVGSQAISKGEFDRLSAQLQ--------------- 148

Query: 211 TFEVKNKALEVERQQLAVRELERQVEALNIKAPVNGIIGNWLTEQKNHLSANQPILTVVD 270
               KNKA         V +L+  +   +I AP  G IG    +  ++L++   I T+ D
Sbjct: 149 ----KNKA--------TVNQLKASLAKKHIVAPFGGTIGIRQVDVGDYLASGTVIATLQD 196

Query: 271 LSAYEAELAVPESYADELGLGMEVEL---SFGEVKLIGKLSSISPEVRNREVTARVQFT- 326
           LS+   +  +PE    ++  G  V++   ++   +  G +S+I+P+V N      V+ T 
Sbjct: 197 LSSLYVDFYIPEHAVPKVAPGQPVQVEVSAYPGEQFPGSISAINPKVENSTRNVLVRATL 256

Query: 327 QNDSLKLRQNQRISARVLLEHRDNVLMVKRGAF-MTSGGDEVY----------QVEGD-- 373
            N   KL         VLL +    ++V  GA   T  G+ VY          +VE D  
Sbjct: 257 ANPEGKLLPGMFTRLDVLLPNPAPQIVVPEGAITYTLYGNSVYAVAEKKTEGGEVEKDAD 316

Query: 374 -----IATRRQIKLGSTSMSQVEVVEGGKASD 400
                IA RR ++ G      V V +G KA +
Sbjct: 317 GKPLLIAERRFVETGERRGGLVLVSKGLKAGE 348