Pairwise Alignments

Query, 419 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 428 a.a., RND family efflux transporter, MFP subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 68.2 bits (165), Expect = 5e-16
 Identities = 92/430 (21%), Positives = 170/430 (39%), Gaps = 77/430 (17%)

Query: 18  KRLKLPLIIGGCT-------LLVSALVWASFSSDKVSQSISRSELTTATLHVGTLTRDVA 70
           K  KL  I+GG         ++  AL W   +++        +E+ T      T+   V+
Sbjct: 5   KSNKLIYILGGVAGVLILFIIIGRALGWVGGAAE--------TEVETTKASKKTIVEKVS 56

Query: 71  TTGKIVAANAPILYSTEEGTVTLLS-NPGDNVARGDVVAKLDSPRLTNALEQAQSVLAGM 129
            +G I       L     G +  L+ + GD+V + D++ K+      +AL++ ++ L   
Sbjct: 57  ASGVIEPETEVKLSPDVAGEIIELNISEGDSVKQNDLLVKIRPDNFISALDRTRANLNQQ 116

Query: 130 QSALERAKLDARRSQLQANQTLDMAKVDLEAAERERRRGELLIQSKLIGQIDYEKGKDDL 189
           ++ L +++   +RS+       D AK+  E       R + L +S +I   ++E+   D 
Sbjct: 117 KANLAQSQAALKRSEA----LFDRAKLQYE-------RNKSLYESNVISDSEFEQATADY 165

Query: 190 HKAKLKFEHALQEVALTKDTLTFEVKNKALEVERQQLAVRELERQVEALNIKAPVNGIIG 249
             A+   + A Q V   +             V+  Q +V E    +   N+ AP +GI+ 
Sbjct: 166 VSAENDLKAAQQSVEAAEYV-----------VKSSQASVEEANENLRLTNVFAPTDGIVS 214

Query: 250 NWLTEQKNHLSANQ-----PILTVVDLSAYEAELAVPESYADELGLG----MEVE-LSFG 299
             L E+   +   Q      +L + DLS  E  + V E+    + LG    +EV+  S  
Sbjct: 215 KLLVEKGERVVGTQQMAGTEMLRIADLSVMEVVVDVNENDIVRISLGDTTIIEVDAYSHT 274

Query: 300 EVKLIGKLSSISPEVRNR---------EVTARV-------QFTQNDSLKLRQNQRISARV 343
             K  G ++SI+     +         EV  R+         T+ +    R     S  +
Sbjct: 275 GEKFTGVVTSIANSANEKATQDAVTEFEVEIRILNESYEKLITKENRYPFRPGMTASVEI 334

Query: 344 LLEHRDNVLMVKRGAFMTSGG-------------DEVYQVEGDIATRRQIKLGSTSMSQV 390
           + E + +VL V   A  T                + ++  EG+ A   ++K G +    +
Sbjct: 335 ITEKKADVLSVPLAAVTTRDDIRVDSTNAESDLQEIIFMSEGNKAHLTRVKTGISDFENI 394

Query: 391 EVVEGGKASD 400
           E++EG K  +
Sbjct: 395 EILEGIKEGE 404