Pairwise Alignments

Query, 532 a.a., long-chain-fatty-acid--CoA ligase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 562 a.a., long-chain-fatty-acid--CoA ligase FadD2 from Pseudomonas sp. SVBP6

 Score =  509 bits (1310), Expect = e-148
 Identities = 270/549 (49%), Positives = 360/549 (65%), Gaps = 27/549 (4%)

Query: 7   SQLELGKYSSLIDLIERTSQRFGDKTAYACLGKNSSFNEIERDSRYFAAYLQNNTNLKPG 66
           SQ+++  Y S++++ ER+ ++F D+ A++ LG   S+ E+ER S  FAAYLQ +T+L PG
Sbjct: 16  SQIDVNAYKSVVEVFERSCKKFADRPAFSNLGVTLSYAELERYSAAFAAYLQQHTDLVPG 75

Query: 67  DRIAIQLPNITQFVIAAYGALRAGLILVNTNPLYTERELIHQFNDSGAKALVVLSDLLPT 126
           DRIA+Q+PN+ Q+ IA +GALRAGLI+VNTNPLYT RE+ HQF DSGA+ALV L+     
Sbjct: 76  DRIAVQMPNVLQYPIAVFGALRAGLIVVNTNPLYTAREMRHQFKDSGARALVYLNMFGKL 135

Query: 127 LAKVVATTPIELVISTHPLDLIDP--------------QVQPKTGLKN-VEFCHVLQQGA 171
           + +V+  T IE +I     D++                ++ P   L   V F   L QG 
Sbjct: 136 VQEVLPDTGIEFLIEAKMGDMLPTAKGWLVNTIVSKVKKMVPDYRLPQAVPFKSALAQGQ 195

Query: 172 LLPFTRFVPTLSDLAALQYTGGTTGLSKGAMLTHGNMLANAAQVKSRIGS-------VIS 224
                    +L D+A LQYTGGTTGL+KGAML+HGN++AN  QV +           +I 
Sbjct: 196 GQSLKPVAQSLDDIAVLQYTGGTTGLAKGAMLSHGNLVANMLQVLACFSQHGPDGQRLIK 255

Query: 225 EGEDIFVAPLPIYHIYAFMVNLVLYFECGGCSVLIPNPRDINGLIKTLAKYPFTGFAGLN 284
           EG+++ +APLP+YHIYAF  N +     G  +VLI NPRDI G IK L K+ F+   GLN
Sbjct: 256 EGQEVMIAPLPLYHIYAFTANCMCMMVTGNHNVLITNPRDIPGFIKELKKWKFSALLGLN 315

Query: 285 TLFVALCHQPEFKALNFSHLKITISGGTALTAAAANLWQQTTGNTISEGYGLSETSPVIS 344
           TLFVAL + PEFK L+FS LK+T SGGTAL +A A  W+  TG  I EGYGL+ETSPV S
Sbjct: 316 TLFVALMNHPEFKNLDFSALKVTNSGGTALVSATAERWESITGCRIVEGYGLTETSPVAS 375

Query: 345 LNAPGY-QKIGTIGKPVLGTEVKLLDESGNEVTQGTAGELAARGPQVMLGYWNNPQETAN 403
            N  G   ++GT+G PV GT  K++D+ G E   G  GEL  +GPQVM GYW +P+ TA 
Sbjct: 376 TNPYGQLARLGTVGIPVPGTAFKVIDDEGVEQPFGERGELCIKGPQVMKGYWQHPEATAE 435

Query: 404 VMTPDGFFKTGDIAILNEEGFHQIVDRKKDMIIVSGFNVYPNEVENVLASHPNIIECAVV 463
            +  +G+FKTGDIA+++ +GF +IVDRKKDMIIVSGFNVYPNE+E V+  HP +  CAV+
Sbjct: 436 ALDSEGWFKTGDIAVIDPDGFTRIVDRKKDMIIVSGFNVYPNEIEEVVMGHPQVASCAVI 495

Query: 464 GVKDDHSGEAVKAFIVLKDDSQDHEKIKTAILNFCREQLTAYKLPKQIEFMSQLPKSTVG 523
           GV D+ SGEAVK F+V ++     E++K     +C+   T YK+PK I     LP + VG
Sbjct: 496 GVPDERSGEAVKLFVVPREGGVTLEELKA----YCKANFTGYKVPKHIVLRESLPMTAVG 551

Query: 524 KILRRELKN 532
           KILRREL++
Sbjct: 552 KILRRELRD 560