Pairwise Alignments

Query, 378 a.a., secretion protein, HlyD family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 393 a.a., Multidrug resistance efflux pump from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  166 bits (421), Expect = 8e-46
 Identities = 125/393 (31%), Positives = 191/393 (48%), Gaps = 27/393 (6%)

Query: 5   YEHYLCIVIFKVFKIPMNKWTVPTAVLGGVFLIGALLLIMNYNHPYSRFAREYYVTIPIT 64
           Y     ++ FK   +P N  +    +   +  + A++L++N   P S   R     + +T
Sbjct: 9   YSGIAWLIFFKFKLLPWNFVSQVIVITLPIVGLAAMILVLNVVAPSSADVRVVNYVVQVT 68

Query: 65  PAVKGLVISVDVKPNTFIKQGDVLFRIDPTPYQAVVKTKKAALLAAEQEVPQLKAAWESA 124
           P V G VI V ++PN  IK+G VLFRIDP P++         LL  + ++P+L+A  +SA
Sbjct: 69  PRVSGRVIEVPIEPNRPIKKGQVLFRIDPEPFEQ-------KLLELQSKLPELEAKIDSA 121

Query: 125 KA---------NVARVAADRE--RNKSAYDRYEQGH--RKGGANSPFTALELDNKRQLYL 171
           +A           AR A D +  R   A  R  Q H   + GA + F   +         
Sbjct: 122 QAYQRELDEQLKGARSARDAQAARLALAVKREAQTHDLSRTGAGTKFDHEQAQADVASLR 181

Query: 172 ASDAQLTAVQAE---ELRARLAYE--SNVDGVNSKVAGLQGDLENALYNLEQTVVRAPAD 226
           A  AQ TA  A+   +L AR      S V    + +  L   ++ A + L+QTV RAPAD
Sbjct: 182 ADLAQTTAKVAQVQQKLSARTPEGDLSEVAQARASLKQLMAQIDYAKWELDQTVYRAPAD 241

Query: 227 GIVTQMALRPGAMAVPLPLRPVMNFIPDEQRYFAGAFWQNSLLRLQEGDEAEVVLDAVPG 286
           G V  + LRPG+ A  LP+ PVM+F+ +EQ +    + QN L  +Q GDEAE+ L   P 
Sbjct: 242 GTVVNLQLRPGSYAAQLPMVPVMSFVENEQ-WILAMYSQNELRNIQPGDEAEIALKTFPN 300

Query: 287 KVFKGKVAKVLPAMAEGEIQMNGTL-QSSNQLFQTGRVIVLIDIEDDAIRREFPAGVAGQ 345
           ++ K +V  ++ +   G++ ++GT+ Q+       GR  V +           P G  G 
Sbjct: 301 RIIKAEVDSIIWSSGTGQLPLSGTVPQTGAAPIPPGRFAVRLKAVGADETAFLPMGAQGA 360

Query: 346 VAVYTEHFHHVAVMRKVLLRMQGWLNYLFFDGH 378
            AVYT+H H + V+RKV+LR+   L+      H
Sbjct: 361 GAVYTQHGHFLHVIRKVILRVGSKLDLFVLKLH 393