Pairwise Alignments

Query, 378 a.a., secretion protein, HlyD family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 357 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 93.6 bits (231), Expect = 8e-24
 Identities = 88/359 (24%), Positives = 160/359 (44%), Gaps = 22/359 (6%)

Query: 26  VPTAVLGGVFLIGALLLIMNYNHPYSRFAREYYVTIPITPAVKGLVISVDVKPNTFIKQG 85
           V  A+LG V + G   +  +   P +  A    V   +TP + G + S++V  N  + +G
Sbjct: 11  VKIAMLGFVAVFG-YFMFADTMMPLTPQAMATRVVTKVTPQISGKIQSINVNNNQVVAKG 69

Query: 86  DVLFRIDPTPYQAVVKTKKAALLAAEQEVPQLKAAWESAKANVARVAADRERNKSAYDRY 145
           D+LF++DP P++  V   K AL    Q+  +L A+  +AKA V   A   ++ +    R 
Sbjct: 70  DLLFQVDPAPFELAVSHAKLALEQVRQDNAELDASLLAAKAEVNASATTAQQKRREAKRL 129

Query: 146 EQGHRKGGANSPFTALELDNKRQLYLASDAQLTAVQA--EELRARLAYESNVDGVNSKVA 203
           +  +   G +        D       A++A L A  A  E+L+    +       N +V 
Sbjct: 130 DALYVTHGVSQQLR----DQADSDAAAAEANLLAANARLEKLKVSRGFYGE---DNLRVR 182

Query: 204 GLQGDLENALYNLEQTVVRAPADGIVTQMALRPGAMAVPLPLRPVMNFIPDEQRYFAGAF 263
                L  A  NL  T +RA  DG+VT + L  G+ A     +P++  + D+    A  F
Sbjct: 183 QAMNALAQAELNLSYTQIRADQDGVVTNLQLEVGSFAA--VGQPLLALVSDKLDIIAD-F 239

Query: 264 WQNSLLRLQEGDEAEVVLDAVPGKVFKGKVAKVLPAMAEGEIQMNGTL---QSSNQLFQT 320
            + +L  +     A +  D  PG+++  +V+ V   ++ G+   NG L   Q S++  + 
Sbjct: 240 REKTLRGVNAAYPALIAFDGEPGRLYHAQVSSVDAGVSAGQFDANGRLAAPQESDRWVRD 299

Query: 321 GRVIVLIDIEDD-----AIRREFPAGVAGQVAVYTEHFHHVAVMRKVLLRMQGWLNYLF 374
            + + L  + DD     +     PAG    V +  ++     ++ KV +++   L+Y++
Sbjct: 300 AQRLRLHLVLDDSKSGNSAMNNLPAGARATVQLLPDN-TLFNLLAKVQIKVISLLHYIY 357