Pairwise Alignments

Query, 378 a.a., secretion protein, HlyD family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 285 a.a., putative membrane protein (VIMSS) from Escherichia coli BW25113

 Score = 70.1 bits (170), Expect = 7e-17
 Identities = 62/263 (23%), Positives = 107/263 (40%), Gaps = 54/263 (20%)

Query: 49  PYSRFAREYYVTIPITPAVKGLVISVDVKPNTFIKQGDVLFRIDPTPYQAVVKTKKAALL 108
           P++R  +     + ITP V G ++ +++K N  +  GD+L  ID TP+Q           
Sbjct: 33  PWTRDGKIRAEQVSITPQVSGRIVELNIKDNQLVNAGDLLLTIDKTPFQ----------- 81

Query: 109 AAEQEVPQLKAAWESAKANVARVAADRERNKSAYDRYEQGHRKGGANSPFTALELDNKRQ 168
                + +L A  + AKA      A+ E N+          R+  + +  +A ELD    
Sbjct: 82  -----IAELNAQAQLAKAQSDLAKANNEANR----------RRHLSQNFISAEELDTA-- 124

Query: 169 LYLASDAQLTAVQAEELRARLAYESNVDGVNSKVAGLQGDLENALYNLEQTVVRAPADGI 228
                                    NV  + + V   Q  L+ A + L QT +RAP  G 
Sbjct: 125 -----------------------NLNVKAMQASVDAAQATLKQAQWQLAQTEIRAPVSGW 161

Query: 229 VTQMALRPGAMAVPLPLRPVMNFIPDEQRYFAGAFWQNSLLRLQEGDEAEVVLDAVPGKV 288
           VT +  R G  A     +P+   +     Y  G F +  L  ++EG  A++ L +   K 
Sbjct: 162 VTNLTTRIGDYAD--TGKPLFALVDSHSFYVIGYFEETKLRHIREGAPAQITLYS-DNKT 218

Query: 289 FKGKVAKVLPAMAEGEIQMNGTL 311
            +G V+ +  A+ +  ++ + +L
Sbjct: 219 LQGHVSSIGRAIYDQSVESDSSL 241