Pairwise Alignments

Query, 378 a.a., secretion protein, HlyD family (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 392 a.a., Multidrug resistance efflux pump from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  172 bits (436), Expect = 1e-47
 Identities = 123/390 (31%), Positives = 201/390 (51%), Gaps = 22/390 (5%)

Query: 5   YEHYLCIVIFKVFKIPMNKWTVPTAVLGGVFLIGALLLIMNYNHPYSRFAREYYVTIPIT 64
           Y   + ++ FK   +P N  +     +  V  I  L+LI+N   P S   R     + + 
Sbjct: 9   YSGIVWLIFFKFKLLPWNTVSQVIVFIIPVVSIALLILILNIVAPSSHDVRVMNYNVEVV 68

Query: 65  PAVKGLVISVDVKPNTFIKQGDVLFRIDPTPYQAVVKTKKAALLAAEQEVPQLKAAWESA 124
           P V GLV+ V V+PN  +K+GD LFRIDP P++  VK  +A L   E ++   +A     
Sbjct: 69  PRVTGLVVDVPVEPNEHVKKGDTLFRIDPLPFELEVKNIEAKLPGLEAKLVSAEAFDREL 128

Query: 125 KANVA----RVAADRERNKSAYDRYEQGHR--KGGANSPFTALELD-NKRQLYLASDAQL 177
           ++ +      +     +   A  R EQ     + GA S F   + + N + L    +AQL
Sbjct: 129 ESQLTTSNNHIRVINTQIDLAVKRLEQTKELAQSGAGSQFDYEQAETNLKNL----EAQL 184

Query: 178 TAVQAEELRA--RLAYESN------VDGVNSKVAGLQGDLENALYNLEQTVVRAPADGIV 229
              ++E+ +   RL+ +S+      V    + +   + DL  A + L+QTV RAPADG V
Sbjct: 185 AVAESEKSQVIQRLSAQSDEGEFAQVSEARAALEQAKSDLAMAKWRLDQTVYRAPADGRV 244

Query: 230 TQMALRPGAMAVPLPLRPVMNFIPDEQRYFAGAFWQNSLLRLQEGDEAEVVLDAVPGKVF 289
             + LR GAMAV  P++PVM+F+ DEQ +    F QN L R+++G+EAE+ L   P ++ 
Sbjct: 245 VNLQLRTGAMAVQFPIKPVMSFVEDEQ-WVVALFAQNELRRVEKGNEAEIALRTHPNRII 303

Query: 290 KGKVAKVLPAMAEGEIQMNGTLQSSNQL-FQTGRVIVLIDIEDDAIRREFPAGVAGQVAV 348
           K  V  ++ A A+G++  +G +  + ++    GR  V + I++D      P G  GQ A+
Sbjct: 304 KCTVDHIVWANAQGQLTASGRIPDTKEMGHHEGRFAVRLTIDEDNDVFLAP-GAVGQGAI 362

Query: 349 YTEHFHHVAVMRKVLLRMQGWLNYLFFDGH 378
           YTEH   + ++RKV++R+   +++L    H
Sbjct: 363 YTEHGKLIHLIRKVIIRVGTKIDWLILKLH 392