Pairwise Alignments

Query, 346 a.a., ISSod13, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 379 a.a., IS481 family transposase from Paraburkholderia sabiae LMG 24235

 Score = 57.4 bits (137), Expect = 6e-13
 Identities = 76/305 (24%), Positives = 124/305 (40%), Gaps = 41/305 (13%)

Query: 19  AEELSNVSRACKVMGVSRDTFYRYRELVDDGGVDALIEKSRRSPNLKNRVEEAVEQAVME 78
           A +  + S  C+   +SR T Y++ +     G   L ++SRR  +   R  E +E  V+E
Sbjct: 20  ATQALSFSELCRRYRISRQTGYKWLDRHKAEGPGGLADRSRRPHHSPLRSPEHIEARVLE 79

Query: 79  YAIEFPAHGQHRTSNELRKKGVFVSGSGVRSIWLRHDLENFKKRLKALEAKVARDGIQLT 138
              E   HG      E R K                DL   +    A   ++ R    L 
Sbjct: 80  LRRE---HGWGGRKIERRLK----------------DLGETEVPAPATITEILRRH-GLI 119

Query: 139 DEQIAALERKKHDDEACGEIETAHPGYLGSQDTFYVGNLKGV--GRIYQQTYVDTYCKVA 196
           DEQ  A ++++H        E AHP  L   D  + G+++ +  GR    T +D + +  
Sbjct: 120 DEQ--ASQQRQH----WQRFEHAHPNLLWQMD--FKGDVQTLKDGRCMPLTVIDDHSRY- 170

Query: 197 HCKLYTTKTPITAADLLNDKVLPFYESQQLPVLRILTDRGTEY---CGKVEHHDYQLYLA 253
              L  +    T   ++   +   +    LP  RI TD G  +       +  +  ++L 
Sbjct: 171 --NLVLSACSRTTTQVVQAALERAFRCYGLPA-RINTDNGAPWGSPSAPGQLTELAVWLI 227

Query: 254 INDIDHTKTKAMSPQTNGICERFHKTILNEFYQVTFRKKLYQTLEELQKDLDEWLSYYNN 313
              I  + ++   PQTNG  ERFH+T+  E       ++ + T   +Q+ LD W   YN 
Sbjct: 228 RLGILVSYSRPYHPQTNGKDERFHRTLKAE----VLDRQAFSTHAHMQQALDRWRHVYNV 283

Query: 314 ERTHQ 318
           ER H+
Sbjct: 284 ERPHE 288