Pairwise Alignments

Query, 346 a.a., ISSod13, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 384 a.a., CP4-6 prophage; predicted DNA-binding transcriptional regulator (NCBI) from Escherichia coli BW25113

 Score = 49.7 bits (117), Expect = 1e-10
 Identities = 70/308 (22%), Positives = 120/308 (38%), Gaps = 43/308 (13%)

Query: 15  LLNLAEELSNVSRACKVMGVSRDTFYRYRELVDDGGVDALIEKSRRSPNLKNRVEEAVEQ 74
           +L  +++ +N+   C+  G+S  T Y++ +     G   L ++ R   +  NR  + +  
Sbjct: 20  VLFASQDGANIRSLCRRFGISPATGYKWLQRWAQEGAAGLQDRPRIPHHSPNRSSDDIT- 78

Query: 75  AVMEYAIEFPAHGQHRTSNELRKKGVFVSGSGVRSI--WLRHDLENFKKRLKALEAKVAR 132
                A+   AH +H                G R I  WL  D  +       +   +AR
Sbjct: 79  -----ALLRMAHDRHERW-------------GARKIKRWLE-DQGHTMPAFSTVHNLMAR 119

Query: 133 DGIQLTDEQIAALERKKHDDEACGEIETAHPGYLGSQDTFYVGNLK-GVGRIYQQTYVDT 191
            G+         L        A G  E   P  L   D  + G+   G GR +  T +D 
Sbjct: 120 HGL---------LPGASPGIPATGRFEHDAPNRLWQMD--FKGHFPFGGGRCHPLTLLDD 168

Query: 192 YCKVAHCKLYTTKTPITAADLLNDKVLPFYESQQLPVLRILTDRGTEYCGKVEHHD-YQL 250
           + + + C  + T       + +  +++  +E   LP  R+  D G+ +          +L
Sbjct: 169 HSRFSLCLAHCTDE---RRETVQQQLVSVFERYGLPD-RMTMDNGSPWGDTTGTWTALEL 224

Query: 251 YLAINDIDHTKTKAMSPQTNGICERFHKTILNEFYQVTFRKKLYQTLEELQKDLDEWLSY 310
           +L    I    ++   PQT G  ERFH+++  E  Q     K +    ELQ+  D W + 
Sbjct: 225 WLMRLGIRVGHSRPYHPQTQGKLERFHRSLKAEVLQ----GKWFADSGELQRAFDHWRTV 280

Query: 311 YNNERTHQ 318
           YN ER H+
Sbjct: 281 YNLERPHE 288