Pairwise Alignments

Query, 940 a.a., isoleucyl-tRNA synthetase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 967 a.a., isoleucyl-tRNA synthetase from Agrobacterium fabrum C58

 Score =  670 bits (1729), Expect = 0.0
 Identities = 391/977 (40%), Positives = 541/977 (55%), Gaps = 84/977 (8%)

Query: 3   DYKFTLNLPETEFPMRGNLANREPEMLERWTKDGLYQQIRDSRIGRTPFILHDGPPYANG 62
           DY  TL LP+T+FPMR  L  +EPE ++RW   GLY+++R S  GR  F+LHDGPPYANG
Sbjct: 9   DYSTTLYLPQTDFPMRAGLPQKEPETVKRWQDMGLYKKLRASAAGREKFVLHDGPPYANG 68

Query: 63  SIHIGHSVNKILKDIIVKSKTMSGFDAPYVPGWDCHGLPIELKVEQKV---GKPGQKISA 119
           +IHIGH++NKILKD+I +S  M GFDA YVPGWDCHGLPIE K+E+     GK   ++  
Sbjct: 69  NIHIGHALNKILKDVITRSFQMRGFDANYVPGWDCHGLPIEWKIEEAYRARGKNKDEVPV 128

Query: 120 AEFREECRKYAAEQVDGQREDFIRLGVLGDWQNPYLTMDFATEANIVRSLSKVIENGHLH 179
            EFR+ECR +AA  +  Q E+F RLG+ GD++NPY TM+F  EA I   L K+  +G L+
Sbjct: 129 NEFRKECRDFAAGWIKVQSEEFKRLGIEGDFENPYTTMNFHAEARIAGELLKIARSGQLY 188

Query: 180 KGVKPVHWCTDCGSALAEAEVEYEDKTSPAIDVAFTAVDSKAVAVKFGVSDYS---HSVS 236
           +G KP+ W     +ALAEAEVEY D            V+S  + VKF V D +     VS
Sbjct: 189 RGSKPIMWSVVERTALAEAEVEYHD------------VESDMIWVKFPVKDAAPALSGVS 236

Query: 237 MVIWTTTPWTLPANRALSISPELDYSLVEFVKDGVTHAVILADVLVEACMTRYGAESHSV 296
           +VIWTTTPWT+P NRA++ S  ++Y L E             + L+ A      A + + 
Sbjct: 237 VVIWTTTPWTIPGNRAIAFSSRVEYGLFEVESAQNDFGPQTGEKLIFARKLADEAAAKAK 296

Query: 297 LA-----KIKGAALELVRFKHPFLA----FDVPAILGDHVTTDAGTGVVHTAPGHGQDDF 347
           L       +K   L  +   HP  +    F VP + GDHVT DAGTG VHTAP HG++DF
Sbjct: 297 LTFKFVRDVKSEELAAITCAHPLASLGYDFPVPLLDGDHVTDDAGTGFVHTAPSHGREDF 356

Query: 348 ---------VVGQKYGLEVANPVGDNGVYKPDTEFFA-------------GQHVFKANDN 385
                    +  +    ++  PV D G Y  D   F                    AN+ 
Sbjct: 357 DAWTNSVRTLEARGIDTKIPFPVDDAGFYTEDAPGFGPSAEGGAARVMDDNGKKGDANER 416

Query: 386 VVALLKEKGALLHHVAYRHSYPHCWRHKTPIIFRATPQWFISMDNH-----NLRKQALSE 440
           V+  L     L      +HSYPH WR K P+IFR TPQWF+ MD        LR ++L  
Sbjct: 417 VIKALIAANNLFARGRLKHSYPHSWRSKKPVIFRNTPQWFVYMDKELGDGTTLRSRSLDA 476

Query: 441 IEQIQWIPDWGQSRIEKMVENRPDWCISRQRTWGVPITLFVHRETEELHPDSVSLMARVA 500
           I+Q +++P  GQ+R+  M+E RPDW +SRQR+WGVPI +F   + E L  ++V+  AR+ 
Sbjct: 477 IDQTRFVPASGQNRLRAMIEGRPDWVLSRQRSWGVPIAVFADEQGEVLVDEAVN--ARIL 534

Query: 501 NRIEQEGIQAWWDLDAAE-LLGEEAE--QYRKVTDTLDVWYDSGSTFASVVAARPEFHGH 557
              E EG  AW+   A E  LG + +  ++++V D LDVW+DSG T    +  RP+    
Sbjct: 535 EAFEAEGADAWFAEGAKERFLGNDHDHAKWQQVMDILDVWFDSGCTHTFTLEDRPDMK-W 593

Query: 558 GVDLYLEGSDQHRGWFMSSLMISTAMTGKAPYKQVLTHGFTVDGKGRKMSKSIGNVIAPQ 617
             D+YLEGSDQHRGWF SSL+ S A  G+APY  V+THGFT+D +GRK SKS+GNV+APQ
Sbjct: 594 PADVYLEGSDQHRGWFHSSLLESCATRGRAPYNAVVTHGFTMDEQGRKQSKSLGNVVAPQ 653

Query: 618 QVTNKLGADILRLWVAATDYSGEMTVSDEILNRSADAYRRIRNTARFLLANLNGFDPKND 677
            V  + GADILRLWV  TDY  +  +   I+  + DAYR++RNT R++L  L       +
Sbjct: 654 DVMKESGADILRLWVMTTDYWEDQRLGKAIIQTNIDAYRKLRNTVRWMLGTL--AHDNGE 711

Query: 678 LVAVEDMVALDRWAVRRAAALQQEIIEAYEQYNFHIVTQKLMQFCSIELGSFYLDIIKDR 737
            +A  D+  L++  + R + L + + + Y+ ++F  +T+ L+ F ++EL +FY DI KD 
Sbjct: 712 EIAYADLPELEKLVLHRLSELDKVVRDGYDAFDFKKITRALIDFANVELSAFYFDIRKDT 771

Query: 738 QYTAKQEGHARRSCQSALFHIAEAMVRWIAPVLSFTADEVW-QLLPGQRDAYV-----FT 791
            Y        RR+  S +  + + +V W+AP+L FT +E W    P     ++       
Sbjct: 772 LYCDAPSSLKRRASLSVIAKLFDCLVTWLAPMLPFTTEEAWLSRYPDAESVHLAQFPEIP 831

Query: 792 QEWYQGLQSITLDTDLSDAYWENLLTVRNEVNKVIEQARRDKRVGGSLE-AEVTLFADAT 850
            EW           D  +A WE +  VR  V   +E  RR+KR+G SLE A V   AD+ 
Sbjct: 832 AEW---------KNDALEAKWEKIRKVRTVVTGALEVERREKRIGSSLEAAPVVHIADSD 882

Query: 851 LTEQLTHIGDELRFVLLTSEAKVLPLVDATSDAVETELASLKLVVNATTAE--KCERCWH 908
           L   L+  G +   + +TS   V+            E+A  K+VV    AE  KC R W 
Sbjct: 883 LLAALS--GQDFAEICITSAITVVGDEGPADGFRLQEVA--KVVVEQKLAEGVKCARSWR 938

Query: 909 HREEVGTIEAHPTLCHR 925
              +VG+   +P +  R
Sbjct: 939 ITTDVGSDPQYPDVSAR 955