Pairwise Alignments

Query, 164 a.a., type IV pilus biogenesis protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 186 a.a., GspH/FimT family pseudopilin from Paraburkholderia sabiae LMG 24235

 Score = 53.5 bits (127), Expect = 2e-12
 Identities = 45/149 (30%), Positives = 70/149 (46%), Gaps = 28/149 (18%)

Query: 6   KGFTLVELMVTIAIAALLLSVGVPSFTAIYEATRSANEMQKINDLFAFARNQAVNYGATV 65
           +GFTL E +V IA+ A+L ++ VPSF A +   +     + +    ++AR +A+  GA V
Sbjct: 12  RGFTLFETLVVIALLAILATLTVPSFVAWHARDQVDARARALLSTLSYARGEALRRGARV 71

Query: 66  TVCPY-AATPCGN----------DWTKGFSVYIENNGAKKVLKVIDGFSSKDTISLTGPT 114
           TVC   AA  C            DW+ G++V IE       L+V    +S   +S+ G  
Sbjct: 72  TVCRVDAARHCLTAAQPYKTGVVDWSCGWAVMIERASGFYPLRVQPDVAS---VSIVGAL 128

Query: 115 DKTVNFTPDGLVSTETSIIYCPSGESDGS 143
              + FTP             P+G+ +GS
Sbjct: 129 -TNLTFTP-------------PAGQVNGS 143