Pairwise Alignments

Query, 400 a.a., ISSod4, transposase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 407 a.a., IS256 family transposase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  450 bits (1157), Expect = e-131
 Identities = 209/388 (53%), Positives = 289/388 (74%), Gaps = 2/388 (0%)

Query: 9   QALKDLQSGKSLTGKDSILGPLIKQLTEAALQAELEQHLAHDPQP--NRKNGKTPKTIKH 66
           Q L++ +SGK   GKD  LGPL+K   EAAL AE++ HL  + +   NR+NGK  K ++ 
Sbjct: 15  QFLEEFRSGKPTFGKDGALGPLLKHFLEAALDAEMDLHLTDEQRQKGNRRNGKVSKQVRT 74

Query: 67  PSGNFELDAPRDRNGTFEPQLIKKNQTTLTDEIERKVLSMFSIGMSYRDINQHVEDMYGL 126
             G  E+++ RDR+ +FEPQ+I+K +T L + +E ++LSM+ +GMS RDI+ H+++ Y +
Sbjct: 75  SDGVIEVESSRDRSSSFEPQIIRKRETVLAENLEPRILSMYGLGMSLRDISAHLKETYDM 134

Query: 127 NVSNATVSAITDKLIPELKAWQQRPLDSHYPIVWLDAIHYKVKEDGRYVSKAVYTLLALN 186
           ++S+ T++A+T+K++P++K WQ RPLD  Y IVWLDA+HYKV+++GR VSKAVY +L ++
Sbjct: 135 DISHDTLAALTEKIVPQVKEWQARPLDPLYCIVWLDAMHYKVRQEGRTVSKAVYNILGID 194

Query: 187 MKGKKEILGLHLSENEGANYWLSVLTDLNNRGVKDILIACVDGLTGFPEAIASIFPHTET 246
             G KE+LG+++SE+EGA +WLSVLTDL  RGV+D+LIAC+D L GF EAI+S+FP  E 
Sbjct: 195 RHGHKELLGVYVSESEGATFWLSVLTDLQQRGVEDMLIACIDNLKGFAEAISSVFPQAEV 254

Query: 247 QLCVIHQIRNSMKYVASKNQKAFMADLKPVYRAVSKEAAEMALDELEAKWGDAYPLVINS 306
           Q C++HQIRNS+KYV SK+QK F+ DLKPVYRA +KE AE+ L ELE  WG  YP V++S
Sbjct: 255 QSCIVHQIRNSIKYVGSKDQKEFIRDLKPVYRAETKELAELRLLELEENWGKKYPKVLDS 314

Query: 307 WRRKWHNLSHYFKYPEHIRKVIYTTNAVEAVHRQFRKLTKTKGAFPNENSLLKLLYAGIL 366
           W+R W  LS YFKY   IR +IYTTN +E  HRQ RK+TKTKGAFP++ +LLKL+Y    
Sbjct: 315 WQRNWEKLSTYFKYAGPIRHLIYTTNTIEGFHRQVRKVTKTKGAFPSDMALLKLIYLSHQ 374

Query: 367 NASDKWTMPIHNWSLCLSQLAIYFEGRL 394
           N S KW MP+ NWS    QL+I+F  R+
Sbjct: 375 NISKKWVMPLSNWSQTAQQLSIWFGDRM 402