Pairwise Alignments

Query, 429 a.a., NADH dehydrogenase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 432 a.a., NADH dehydrogenase from Pseudomonas simiae WCS417

 Score =  352 bits (902), Expect = e-101
 Identities = 190/432 (43%), Positives = 266/432 (61%), Gaps = 6/432 (1%)

Query: 3   TKRIVIVGGGAAGLALASKLGRKLGGSDVVDVCLIDKSPIHIWKPKLHEVAVGVIDQSIE 62
           T RI+IVGGGA GL LA++LG+ LG      + L+D +  HIWKP LHEVA G ++ S +
Sbjct: 2   THRIIIVGGGAGGLELATRLGKTLGKRGTASITLVDTNLTHIWKPLLHEVAAGSLNSSED 61

Query: 63  GLLYRDHGLKNGYRYLRGEIEQCDPDTKTIRLAAVYSDSGELLLEPRQIEYDFLVLALGG 122
            L Y      N + +  G +   D + K I+LAA   + G  L+  R + YD LV+A+G 
Sbjct: 62  ELNYVAQAKWNHFEFQLGRMSGLDREQKKIQLAATLDEEGRELVPARVLGYDSLVIAVGS 121

Query: 123 VSNSFNTLGAEQHCIFLDSLDNANLFHQKLLDALLQLNETQ----EKVSIGIVGAGATGV 178
            +N F T GA QHC+FLD+   A  FHQ+LL+  L+ +  Q    EK+S+ IVGAGATGV
Sbjct: 122 TTNDFGTEGAAQHCLFLDTRKQAERFHQQLLNHYLRAHAGQTDVVEKISVAIVGAGATGV 181

Query: 179 ELAAELHHVIESVKEYGYLNISKHHLDVHLIEASPKILPQLPERVSARAQAVLDKIGIRL 238
           ELAAELH+    +  YG   I   ++ + LIEA P++LP LPER+ A     L+K+G+ +
Sbjct: 182 ELAAELHNAAHELAAYGLDRIKPENMHITLIEAGPRVLPALPERIGAPVHKTLEKLGVTV 241

Query: 239 HIGVQVKEVTRDGFITQDGDMIKASLKVWAAGVKGPKAFQNFSKLPITPRNQVEVDACMR 298
                V EVT D  IT  G +I ASLKVWAAG++ P   ++   L     NQ++V   ++
Sbjct: 242 LTNSAVSEVTADALITSSGQVIPASLKVWAAGIRAPGFLKDIDGLETNRINQLQVLPTLQ 301

Query: 299 VKGQQDIYAIGDCALLIL-DSGQPVPPRAQAAAQMADTLYENIVNRLQGKVEKPFVYKDY 357
               ++I+A GDCA      + + VPPRAQAA Q A  L +++  R++GK    + Y DY
Sbjct: 302 TTRDENIFAFGDCAACPQPGTDRNVPPRAQAAHQQASLLAKSLKLRIEGKDLPSYKYTDY 361

Query: 358 GSLVSLSRFSAVGNLMGNLRSGTFFVEGHIARLMYISLYQRHLASLYGWFSAIIYRIAQK 417
           GSL+SLSRFSAVGNLMGNL +G+  +EG +AR+ Y+SLY+ H  +LYG+F   +  +  K
Sbjct: 362 GSLISLSRFSAVGNLMGNL-TGSVMLEGWLARMFYVSLYRMHQMALYGFFRTAMLMLGSK 420

Query: 418 LLKWQRPKLKLH 429
           + +   P+LKLH
Sbjct: 421 IGRGTEPRLKLH 432