Pairwise Alignments

Query, 429 a.a., NADH dehydrogenase (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 434 a.a., respiratory NADH dehydrogenase 2/cupric reductase from Escherichia coli BL21

 Score =  371 bits (953), Expect = e-107
 Identities = 193/429 (44%), Positives = 270/429 (62%), Gaps = 3/429 (0%)

Query: 4   KRIVIVGGGAAGLALASKLGRKLGGSDVVDVCLIDKSPIHIWKPKLHEVAVGVIDQSIEG 63
           K+IVIVGGGA GL +A++LG KLG      + L+D++  H+WKP LHEVA G +D+ ++ 
Sbjct: 6   KKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHSHLWKPLLHEVATGSLDEGVDA 65

Query: 64  LLYRDHGLKNGYRYLRGEIEQCDPDTKTIRLAAVYSDSGELLLEPRQIEYDFLVLALGGV 123
           L Y  H   +G+++  G +   D + KTI +A +  + GELL+  R+I YD LV+ALG  
Sbjct: 66  LSYLAHARNHGFQFQLGSVIDIDREAKTITIAELRDEKGELLVPERKIAYDTLVMALGST 125

Query: 124 SNSFNTLGAEQHCIFLDSLDNANLFHQKLLDALLQLNET---QEKVSIGIVGAGATGVEL 180
           SN FNT G +++CIFLD+   A  FHQ++L+  L+ +       KV+I IVG GATGVEL
Sbjct: 126 SNDFNTPGVKENCIFLDNPHQARRFHQEMLNLFLKYSANLGANGKVNIAIVGGGATGVEL 185

Query: 181 AAELHHVIESVKEYGYLNISKHHLDVHLIEASPKILPQLPERVSARAQAVLDKIGIRLHI 240
           +AELH+ ++ +  YGY  ++   L+V L+EA  +ILP LP R+SA A   L K+G+R+  
Sbjct: 186 SAELHNAVKQLHSYGYKGLTNEALNVTLVEAGERILPALPPRISAAAHNELTKLGVRVLT 245

Query: 241 GVQVKEVTRDGFITQDGDMIKASLKVWAAGVKGPKAFQNFSKLPITPRNQVEVDACMRVK 300
              V      G  T+DG+ I+A L VWAAG+K P   ++   L     NQ+ V+  ++  
Sbjct: 246 QTMVTSADEGGLHTKDGEYIEADLMVWAAGIKAPDFLKDIGGLETNRINQLVVEPTLQTT 305

Query: 301 GQQDIYAIGDCALLILDSGQPVPPRAQAAAQMADTLYENIVNRLQGKVEKPFVYKDYGSL 360
              DIYAIGDCA      G  VPPRAQAA QMA     NI+ ++ GK  K + YKD+GSL
Sbjct: 306 RDPDIYAIGDCASCPRPEGGFVPPRAQAAHQMATCAMNNILAQINGKPLKNYQYKDHGSL 365

Query: 361 VSLSRFSAVGNLMGNLRSGTFFVEGHIARLMYISLYQRHLASLYGWFSAIIYRIAQKLLK 420
           VSLS FS VG+LMGNL  G+  +EG IAR +YISLY+ H  +L+G+F   +  +   + +
Sbjct: 366 VSLSNFSTVGSLMGNLTRGSMMIEGRIARFVYISLYRMHQIALHGYFKTGLMMLVGSINR 425

Query: 421 WQRPKLKLH 429
             RP+LKLH
Sbjct: 426 VIRPRLKLH 434