Pairwise Alignments

Query, 324 a.a., methyl-accepting chemotaxis protein, putative (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 559 a.a., chemotaxis protein from Pseudomonas simiae WCS417

 Score = 62.8 bits (151), Expect = 2e-14
 Identities = 42/132 (31%), Positives = 74/132 (56%), Gaps = 4/132 (3%)

Query: 197 ANDIVINTIRTQQATGEIQKVQSRVAE-TDSVMQASQTLSNQGVNRS---EEIKLVLSKV 252
           A+++     RTQ +T EIQ +  R+   T++ ++A +  S+ G   S    E    L  +
Sbjct: 428 ADEVRALASRTQTSTQEIQGMIDRLQTGTEAAVEAMRRSSDAGDGTSAQANEAGASLDTM 487

Query: 253 TDLVSNISNMNIEVSHAAQEQTCVTEAISRTLNDLANVSGSASLDSEHLAQSSERLFHQG 312
             L+  I++MN +++ AA+EQT V E I+R+++ +A    S + +++  AQ+S  L   G
Sbjct: 488 AQLIGTINSMNAQIASAAEEQTAVAEEINRSVHQIAVAVDSVADETQLGAQTSRSLAELG 547

Query: 313 ERLRALVTSFRL 324
           +RL  LV  FR+
Sbjct: 548 QRLGQLVGQFRI 559



 Score = 26.6 bits (57), Expect = 0.002
 Identities = 26/145 (17%), Positives = 65/145 (44%), Gaps = 23/145 (15%)

Query: 179 QLKETEAAVTVISQLSASANDIVINTIRTQQATGEIQKVQSRVAETDSVMQASQTLSNQG 238
           Q  ET+   T I+Q+S++A ++                  +R A+  SV  A+Q    +G
Sbjct: 312 QRHETDQVATAINQMSSAAQEV------------------ARSAQGASV--AAQQTDAEG 351

Query: 239 VNRSEEIKLVLSKVTDLVSNISNMNIEVSHAAQEQTCVTEAIS--RTLNDLANVSG-SAS 295
                 +   ++++  LV++I +  + +    Q+ + +   +S  R++ +  N+   +A+
Sbjct: 352 QAAKRVVDGSIAQIHALVNDIRSSGVSLDSLQQDVSSIVSVLSVIRSIAEQTNLLALNAA 411

Query: 296 LDSEHLAQSSERLFHQGERLRALVT 320
           +++    ++        + +RAL +
Sbjct: 412 IEAARAGEAGRGFAVVADEVRALAS 436