Pairwise Alignments

Query, 435 a.a., N-acetyl glucosamine transporter, NagP (from data) from Shewanella oneidensis MR-1

Subject, 438 a.a., L-fucose transporter (NCBI) from Escherichia coli BW25113

 Score =  144 bits (362), Expect = 7e-39
 Identities = 122/423 (28%), Positives = 189/423 (44%), Gaps = 58/423 (13%)

Query: 4   DKSQQKSSFLPMAIVAALFFILGFATWLNGSLMPYLKQILQLNPFQASLILFSFYIAVTF 63
           D  Q +S  +P A++ +LFF+   A  LN  L+P  +Q   L  FQA LI  +FY     
Sbjct: 17  DAGQSRSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFI 76

Query: 64  TALPSAWVIRKVGYKNGMALGMGVMMIAGLLFIPAAKTQVFALFLFAQLVMGAGQTLLQT 123
             +P+  +++K+ YK G+  G+ +  +   LF PAA+   + LFL    ++ AG   L+T
Sbjct: 77  IPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLET 136

Query: 124 AVNPYVVRLGPEESAAARVSVMGILNKGAGVIAPLVFSALILDSFKDRIGTTLTQV---Q 180
           A NP+V  LGPE S   R+++    N    +IA +   +LIL +   +    L ++   Q
Sbjct: 137 AANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQ 196

Query: 181 IDEMANGLVL----PYLGMAVFIGILALAVKKSPLPELSNEDEVADHTDKSQIKAALSHP 236
           +    + LVL    PY+ +   + ++AL +  +  P L ++    +H+D  Q   + S  
Sbjct: 197 LSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD----NHSDAKQGSFSASLS 252

Query: 237 NLA------LGVLALFVYV-------------AVEVIAGDTIGTFALSLGIDHYGVMTSY 277
            LA        VLA F YV             AVE I G T G  A  L         + 
Sbjct: 253 RLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYL---------TG 303

Query: 278 TMVCMVLGYILGILLIPRVISQPTALMISAILGLLLTLGILFGDNNSYAIANLLLVPFGG 337
           TMVC  +G   G  LI R  +    L   A++ + L L   F                G 
Sbjct: 304 TMVCFFIGRFTGTWLISR-FAPHKVLAAYALIAMALCLISAFAG--------------GH 348

Query: 338 VALPDTLLLIAFLGLANAIVWPAVWPLALSGMGKLTSTGSALLIMGIAGGAFGPVSWGLM 397
           V L    L  AF+    +I +P ++ L +  +G+ T  GS+ ++M I GG       G +
Sbjct: 349 VGLIALTLCSAFM----SIQYPTIFSLGIKNLGQDTKYGSSFIVMTIIGGGIVTPVMGFV 404

Query: 398 SSA 400
           S A
Sbjct: 405 SDA 407