Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1014 a.a., putative Multidrug efflux RND transporter from Pseudomonas putida KT2440

 Score =  608 bits (1569), Expect = e-178
 Identities = 360/1025 (35%), Positives = 599/1025 (58%), Gaps = 38/1025 (3%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M  +D  ++RPV+A V+SLL+ + G  ++ KL +R+ P +E+ ++TV+T+Y GA+A  ++
Sbjct: 1    MAFTDTFIQRPVLASVVSLLILLLGFQAWNKLQIRQYPQMENALITVTTAYPGANAETIQ 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
              IT+ L+  L    GID +TS +R   S I++   +G +     +++       + +LP
Sbjct: 61   GYITQPLQQSLASAEGIDYMTSVSRQNFSIISIYARIGADSDRLFTELLAKANEVRNKLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
            +D+ DPV+SK+       +YV+  S  M   Q+TDY  RV++ + + + G++   I G  
Sbjct: 121  QDSEDPVLSKEAADASALMYVSFYSKEMSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
               M + L P ++AG  ++ TD+T+A+R+ N  +  G+V+ +  V SV       + + F
Sbjct: 181  VFAMRLWLDPVKLAGFGLSATDVTNAVRRYNFLSAAGEVKGEYVVTSVNASTELKSAEAF 240

Query: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300
              L ++T+ D   + L DVA V +GA+N ++    DG  ++ +G+     ANPL V +EV
Sbjct: 241  AALPLKTSGDSR-VLLGDVARVEMGAENYDTVSSFDGTPSVYIGIKATPAANPLDVIKEV 299

Query: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360
             + + +++  LP   ++ + +D+T FI  SI+EV  TL     +V++V+++F+G +R+ L
Sbjct: 300  RRIMPELESQLPSALNVSIAYDATRFIQASIDEVIKTLGEAVLIVIVVVFLFLGALRSVL 359

Query: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420
            IP VT+P+S+I       M GYS+NLLTL+A++LAIGLVVDDAIVVVENI  H+E+G+ P
Sbjct: 360  IPVVTIPLSMIGVLFFMQMMGYSLNLLTLLAMVLAIGLVVDDAIVVVENIHRHMEEGKSP 419

Query: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480
              AA +G RE+   VV+ T  L  V+ PI F+ G+ G LF EF++ LA +V+ S ++ALT
Sbjct: 420  FDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVIISGIVALT 479

Query: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYH--VGVTHAIRFRLLAPLVILACIGG 538
            L+P++ + LL+    P+     +D+ F R++  Y   +  T   R  +L   VI+ C+  
Sbjct: 480  LSPMMCALLLRREQNPSGLAHRLDQLFERLKGRYQRLLHATLDSRPVVLVFAVIILCL-- 537

Query: 539  SVWLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVE---DRLMPLLGQGVLR 595
               L++    +LAP ED+GV++         S +   AN+D +    D+  PL      +
Sbjct: 538  IPVLLKFTQNELAPNEDQGVIFMM-------SSSPQPANLDYLNAYTDQFTPL-----FK 585

Query: 596  SFSVQAPAF--GGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMV----R 649
            +F     +F   G  G QTG     L+ W  R  T  + L ++   L++I  + +     
Sbjct: 586  AFPEYYSSFQINGFNGVQTGIGGFLLKPWNERERTQMELLPLVQAKLEEISGLQIFGFNL 645

Query: 650  PMMPGFRGQSSEPVQFVLG-GSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIV 708
            P +PG  G+   P QFV+    DY  L   AQ +K +A  S      D+D A   PE++V
Sbjct: 646  PSLPG-TGEGL-PFQFVINTAGDYPALLDVAQRIKTRAQESGKFAFLDIDLAFDKPEVVV 703

Query: 709  TVDKERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQI 768
             +D+ +AA++G+S+D +  TL  +LG  +   +   G  Y V  + +    +N G L+  
Sbjct: 704  DIDRAKAAQMGVSMDTLGGTLATLLGEAEINRFTLEGRSYKVIAQVERPYRDNPGWLNNY 763

Query: 769  YMRSAKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKG---YTLGEALTFLEN 825
            Y+++ +G+L+ L T+  + + A  ++L+   +     L A I +G    +LGEAL  +++
Sbjct: 764  YVKNDQGQLLPLSTLITLTDRARPRQLNQFQQ-----LNAAIIQGVPMVSLGEALKTVQD 818

Query: 826  KSIELLPKDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTV 885
             + E  P+  +  Y G ++ + +  S++++ FGLAL + +LVLAAQFESF +PLV++ TV
Sbjct: 819  IAREEAPEGFAFDYAGAARQYVQEGSALWVTFGLALAIIFLVLAAQFESFRDPLVILVTV 878

Query: 886  PMGVFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLRD-RGLALDKAII 944
            P+ + G  L L +    +NIY+Q+G++ LIG+++K+GILIVEFANQLRD RGL++ +AI 
Sbjct: 879  PLSICGALLPLFLGVSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRDERGLSVREAIE 938

Query: 945  DASTRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAM 1004
            +A+  RLRP+LMT    + G +PLI ++GAG+ SR  +G V+  GM+  T  TLFV+P +
Sbjct: 939  EAAAIRLRPVLMTTAAMVFGMVPLILASGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCI 998

Query: 1005 YRLIS 1009
            Y L++
Sbjct: 999  YTLLA 1003