Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1027 a.a., MexW/MexI family multidrug efflux RND transporter permease subunit from Pseudomonas sp. SVBP6

 Score =  603 bits (1556), Expect = e-176
 Identities = 352/1019 (34%), Positives = 570/1019 (55%), Gaps = 25/1019 (2%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M  +D+ V+RPV+A+V+S+L+ + G++S  +L +R+ P +ES  +TV+T Y GASA +M+
Sbjct: 1    MKFTDLFVRRPVLALVVSILILLLGILSLRQLPIRQYPMLESSTITVTTEYPGASAELMQ 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
              +T+ +   ++ + GID ++S++  G S +TV+  L  + T+ +++V   V + + RLP
Sbjct: 61   GFVTQPIAQAVSSVEGIDYLSSSSVQGRSLVTVRMELNRDSTQALTEVMAKVNQVRFRLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
            E A DPV+ + +G      Y+  +S+ +    +TDY  RV+E   + I GV+ + + GG 
Sbjct: 121  EQAYDPVIERSSGESTAVAYIGFASNSLSTPAMTDYLARVVEPILTTIDGVAKVQVFGGQ 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
               M + + P ++A R +T  D+  A+R+ N +   G+V+    V ++R      +  +F
Sbjct: 181  TLSMRLWIDPARLAARGLTAADVAEAVRRNNYQAAPGKVKGQFVVSNIRVNTDLTSVGEF 240

Query: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300
              LV+R   +G  + +KDV  V +GA +  ++   DG+  + LG+      NPLV+   +
Sbjct: 241  RELVIRNDGNGL-VRIKDVGTVELGAASVETSASMDGVRAVHLGLFPTPGGNPLVIVDGI 299

Query: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360
             K +  I+  LP      + F++  FI  SI+EV  TL     +VV+V+Y+ +G +R  L
Sbjct: 300  RKVLPDIRKTLPPDVKAELAFETARFIQASIDEVSKTLLEALLIVVIVIYLCLGSLRTVL 359

Query: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420
            IP VT+P+S++ A     MFG+S+NLLTL+A++LA+GLVVDDAIVVVEN+  HIE+G+ P
Sbjct: 360  IPVVTIPLSMLGAAALMLMFGFSLNLLTLLAMVLAVGLVVDDAIVVVENVHRHIEEGKTP 419

Query: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480
            + AA  G REV   V+A T  L  V+ PI  M G+ G LF EF++ LA +V+ S ++ALT
Sbjct: 420  VAAALVGAREVAGPVIAMTITLAAVYAPIGMMGGLTGALFREFALTLAGAVVVSGVVALT 479

Query: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFRLLAPLVILACIGGSV 540
            L+PV+SS LL+A     R     +R F  + + Y   +  ++  R L+    L  +    
Sbjct: 480  LSPVMSSFLLQAKQSEGRMAHAANRFFDALARRYSRALEFSLARRWLSAGFALLVLLSLP 539

Query: 541  WLMQQVPAQLAPQEDRGVLYAFVKGAEGTS---YNRMTANMDIVEDRLMPLLGQGVLRSF 597
            WL      +LAP ED+  L   +K  +  +     R    +D V  RL   +   ++   
Sbjct: 540  WLYGLPQRELAPTEDQAGLLTAIKAPQHANLEYVERFADKLDQVYKRLPETVSTWIINGS 599

Query: 598  SVQAPAFGGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMV----RPMMP 653
               A   GG          + L  W+ R  TA Q    +  A+ D+    +     P +P
Sbjct: 600  DGLASGIGG----------INLSLWDERERTASQIQVDLQAAVNDVEGTSIFAFQLPALP 649

Query: 654  GFRGQSSEPVQFVLGGS-DYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTVDK 712
            G  G    PVQ VL  S DY  L++  Q +K++A  S +    D D     P + V VD+
Sbjct: 650  GSTG--GLPVQLVLRSSQDYQVLYQTMQEIKQKARDSGLFAVVDSDLDYNNPVVQVRVDR 707

Query: 713  ERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYMRS 772
             +A  LGI + D+ ++L V++G      +   G  YDV  +   +       L++ Y+RS
Sbjct: 708  AKANSLGIRMQDIGESLAVLVGENYLNRFGLEGRSYDVIAQSPRSQRLTAQTLTRQYVRS 767

Query: 773  AKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEALTFLENKSIELLP 832
              G LV L TV  + E     +L+  N+Q + T +   + G TLG+A+ FL+  +   LP
Sbjct: 768  EDGTLVPLSTVVQVSEQVEPNKLTQFNQQNAATFQGIPAVGVTLGDAVAFLDQVAAS-LP 826

Query: 833  KDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMGVFGG 892
               S  +  +++ + +  S++ + F  A++V YLVLAAQ+ES ++PL+++ TVP+ + G 
Sbjct: 827  AGFSYDWQSDARQYTQEGSALMLAFLAAVIVIYLVLAAQYESLVDPLIILITVPLSISGA 886

Query: 893  FLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGLALDK--AIIDASTRR 950
             + L +    +NIY+QIG++ LIG+++K+GIL+VEFAN L++    LD+  AI  A+  R
Sbjct: 887  LIPLALGYATVNIYTQIGLVTLIGLISKHGILMVEFANTLQEHE-QLDRAAAISKAAQIR 945

Query: 951  LRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYRLIS 1009
            LRPILMT    +VG IPL+F++GAG+ SR  +G V+  GM   T  TLFV+P +Y L++
Sbjct: 946  LRPILMTTAAMVVGLIPLLFASGAGANSRFGLGLVIVCGMLIGTLFTLFVLPTVYSLLA 1004