Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1017 a.a., Multidrug efflux system, inner membrane proton/drug antiporter (RND type) from Pseudomonas sp. S08-1

 Score =  610 bits (1572), Expect = e-178
 Identities = 349/1028 (33%), Positives = 592/1028 (57%), Gaps = 32/1028 (3%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M  +D  ++RPV+A V+SLL+ + G  +F+KL +R+ P +E+ ++TV+T+Y GA+A  ++
Sbjct: 1    MAFTDPFIRRPVLATVVSLLIILLGFQAFSKLVIRQYPQMENALITVATAYPGANAETIQ 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
              IT+ L+  L    GID +TS+++   S I++   +G +     +++       + +LP
Sbjct: 61   GYITQPLQQSLASAEGIDYMTSSSQQNLSTISIYARIGADTDRLFTELLAKANEVKNQLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
            +DA DPV+SK+       +YV+  S  +   Q+TDY  RV++ + + + G++   I G  
Sbjct: 121  QDAEDPVLSKEAADASALMYVSFYSDELSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
               M + L P +MA   +T TD+T A+++ N     G+V+    V S+       + + F
Sbjct: 181  VFAMRLWLDPVKMAAYGITATDVTDAVQRYNFLAAAGEVKGQYVVTSINATTDLKSAEAF 240

Query: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300
              + V+T+ D   + ++D+A V +GA+N +S    DGI ++ + +     ANPL V + V
Sbjct: 241  AAIPVKTSGDSR-VLVRDIARVEMGAENYDSISSFDGIPSVYIAIKGTPSANPLDVIKHV 299

Query: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360
               + +++  LP    + + +D+T FI  SI EV  TL     +V++V+++F+G  R+ L
Sbjct: 300  RGILPELESQLPPNLKVSIAYDATEFIRASIEEVVKTLGEAVLIVIVVVFLFLGAFRSVL 359

Query: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420
            IP +T+P+S+I       + GYSINLLTL+A++LAIGLVVDDAIVVVENI  HIE+G+ P
Sbjct: 360  IPVITIPLSMIGVLFFMQLMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKTP 419

Query: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480
              AA +G RE+   V++ T  L  V+ PI F+EG+ G LF EF++ LA +V+ S ++ALT
Sbjct: 420  FDAAIEGAREIAVPVISMTITLAAVYAPIGFLEGLTGALFKEFALTLAGAVIISGVVALT 479

Query: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFRLLAPL--VILACIGG 538
            L+P++ S+LL+    P      +D  F ++++ Y   +   +  R +  +  +I+ C+  
Sbjct: 480  LSPMMCSRLLRHEENPTGLAHKLDMAFDKLKRRYQKALHGTLNTRPVVVVFGIIVMCL-- 537

Query: 539  SVWLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPLLGQGVLRSFS 598
               L+    ++LAP+ED+G+++ F    + T+ N M A  D             + + F 
Sbjct: 538  IPVLLSFTKSELAPEEDQGIVFLFANAPQPTNLNYMNAYTDQFVK---------IFKEFP 588

Query: 599  VQAPAF--GGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMV----RPMM 652
                +F   G  G Q+G     L  W  R  T  + L I+   L DIP + +     P +
Sbjct: 589  EYYSSFQINGFDGVQSGIGGFLLTPWSERERTQMELLPIVQHRLNDIPGLQIFGFNLPSL 648

Query: 653  PGFRGQSSEPVQFVLG-GSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTVD 711
            PG  G+   P QFV+   +DY  L +  + +K++A AS      ++D A   PE++V +D
Sbjct: 649  PG-TGEGL-PFQFVINTPNDYESLLQVTEKIKQEALASGKFAFLNVDLAFDKPEVVVDID 706

Query: 712  KERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYMR 771
            + +AA++G+S+ D+  TL ++LG  +   +   G  Y V  + +    +N   LS  +++
Sbjct: 707  RAKAAQMGVSMQDLGATLAILLGEGEVNRFTIDGRSYKVIAQVERAYRDNPSWLSNYHVK 766

Query: 772  SAKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKG---YTLGEALTFLENKSI 828
            S  G++V L T+  + + A   +L    +     L A I +G    ++GEA+  +   + 
Sbjct: 767  SESGQMVPLATLIKVSDRARPTKLKQFQQ-----LNAAIIEGVPIVSMGEAVDTVAQIAQ 821

Query: 829  ELLPKDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMG 888
            +  P+  +  Y G S+ + +  S++F+ F LAL + +LVLAAQFESF +PLV++ TVP+ 
Sbjct: 822  KEAPRGYTFDYAGASRQYIQEGSALFVTFALALAIIFLVLAAQFESFRDPLVILVTVPLS 881

Query: 889  VFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLR-DRGLALDKAIIDAS 947
            + G  + + +    +NIY+Q+G++ LIG+++K+GILIVEFANQLR D+GL++ +AI +A+
Sbjct: 882  ICGALIPIFLGFSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRHDKGLSVREAIEEAA 941

Query: 948  TRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYRL 1007
            + RLRP+LMT    + G +PLI +TGAG+ SR  +G V+  GM+  T  TLFV+P +Y L
Sbjct: 942  SIRLRPVLMTTAAMVFGMVPLILATGAGAVSRFDIGLVIATGMSIGTLFTLFVLPCVYTL 1001

Query: 1008 ISAATHSP 1015
            +++   +P
Sbjct: 1002 LASPDKAP 1009