Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1008 a.a., Multidrug efflux pump subunit AcrB from Pseudomonas sp. DMC3

 Score =  590 bits (1521), Expect = e-172
 Identities = 341/1022 (33%), Positives = 590/1022 (57%), Gaps = 32/1022 (3%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M  +D  ++RPV+A V+SLL+ + G  +++KL +R+ P +E+ ++TV+T+Y GA+A  ++
Sbjct: 1    MAFTDPFIRRPVLATVVSLLIVLLGFQAWSKLPLRQYPQMENALITVTTAYPGANAETIQ 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
              IT+ ++  L    GID +TS +R   S I++   +G N     +++       + +LP
Sbjct: 61   GYITQPMQQSLASAEGIDYMTSVSRQNFSVISIYARIGANTDRLFTELLAKANEVKNKLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
            +DA DPV+SK++      +Y++  S  +   Q+TDY  RV++ + + + G++   I G  
Sbjct: 121  QDAEDPVLSKESADASALMYISFFSKDLSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
               M + L P ++AG  ++  D+T+A+R+ N  +  G+V+ + TV S+       + + F
Sbjct: 181  VFAMRLWLDPVKLAGFGLSAADVTAAVRQYNFLSAAGEVKGEYTVTSINANTELKSAEAF 240

Query: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300
              + ++   D   + L+DVA V +GA+N +S     G  ++ +G+     ANPL V +EV
Sbjct: 241  AAIPLKVDGDSR-VLLRDVARVEMGAENYDSISSFGGTPSVYIGIKATPGANPLDVIKEV 299

Query: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360
             K + +++  LP      + +D+T+FI  SI+EV  TL+    +V++V+++F+G +R+ +
Sbjct: 300  RKLMPELEAQLPPNLKSEIAYDATLFIQASIDEVVKTLFEAVLIVIVVVFLFLGALRSVV 359

Query: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420
            IP VT+P+S+I       M GYS+NLLTL+A++LAIGLVVDDAIVVVENI  HIE+G+ P
Sbjct: 360  IPVVTIPLSMIGVMFFMQMMGYSMNLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKTP 419

Query: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480
              AA +G RE+   VV+ T  L  V+ PI F+ G+ G LF EF++ LA +V+ S ++ALT
Sbjct: 420  FDAALEGAREIAMPVVSMTITLAAVYAPIGFLTGLTGALFKEFALTLAGAVVISGVVALT 479

Query: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFR--LLAPLVILACIGG 538
            L+P++ + LL+    P+     +DR F  +++ Y   +   +  R  +L   VI+ C+  
Sbjct: 480  LSPMMCAFLLRHEENPSGLAHRLDRVFEGLKRRYQSMLHGTLNTRPVVLVFAVIVLCL-- 537

Query: 539  SVWLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPLLGQGVLRSFS 598
                ++   ++LAP ED+G+++      + T+ + ++   D             + + F 
Sbjct: 538  IPVFLKFTKSELAPDEDQGIIFMMASAPQPTNLDYLSTYTDEFIT---------IFKEFP 588

Query: 599  VQAPAF--GGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMV----RPMM 652
                +F   G  G Q G     L+ W  R+ T  + L  +   L+ IP + +     P +
Sbjct: 589  EYYSSFQINGYNGVQAGIGGFLLKPWNERSRTQMEILPEVQSKLESIPGLQIFGFNLPSL 648

Query: 653  PGFRGQSSEPVQFVLG-GSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTVD 711
            PG  G+   P +FV+   +DY  L + A+ ++++A  S      DLD A   PE++V +D
Sbjct: 649  PG-TGEGL-PFEFVVNTANDYELLLQVAERIEKRAMESGKFAFVDLDLAFDKPEVVVDID 706

Query: 712  KERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYMR 771
            +++AA++G+S+ D+  TL  +LG  +   +   G  Y V  + +    +N   L+  Y++
Sbjct: 707  RDKAAQMGVSMLDLGSTLATLLGEAEINRFTIDGRSYKVIAQVERAYRDNPDWLNNYYVK 766

Query: 772  SAKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGY---TLGEALTFLENKSI 828
            + +GEL+ L T+  + + A  ++L+   +     L A    G+   ++GEA+  +   + 
Sbjct: 767  NTQGELLPLSTLIKVSDRARPRQLNQFQQ-----LNAAKISGFPLVSMGEAIDTVLQIAR 821

Query: 829  ELLPKDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMG 888
            E  P   +  Y G S+ + +  S++++ F LAL + +LVLAAQFESF +PLV++ TVP+ 
Sbjct: 822  EEAPAGFAFDYGGASRQYVQEGSALWVTFALALAIIFLVLAAQFESFRDPLVILVTVPLS 881

Query: 889  VFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLR-DRGLALDKAIIDAS 947
            + G  + L +    +NIY+Q+G++ LIG+++K+GILIVEFANQLR D+GL+  +A+ +A+
Sbjct: 882  ICGALIPLFLGWSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRKDKGLSAREAVEEAA 941

Query: 948  TRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYRL 1007
              RLRP+LMT    + G +PLI +TGAG+ SR  +G V+  GM+  T  TLFV+P +Y  
Sbjct: 942  AIRLRPVLMTTAAMVFGMVPLILATGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCVYTF 1001

Query: 1008 IS 1009
            ++
Sbjct: 1002 LA 1003