Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1021 a.a., Multidrug resistance protein MdtC from Pseudomonas sp. DMC3

 Score =  512 bits (1318), Expect = e-149
 Identities = 322/1014 (31%), Positives = 535/1014 (52%), Gaps = 26/1014 (2%)

Query: 15   IVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIMESQITKTLEDELTGI 74
            ++LSL + + G VSF  L V  +P ++ PV+ V  S  GAS  +M S +   LE     I
Sbjct: 1    MLLSLAIMLLGGVSFGLLPVSPLPQMDFPVIVVQASLPGASPEVMASTVATPLERSFGAI 60

Query: 75   SGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLPEDAND-PVVSKDNG 133
            +G++ ++S +  GS+R+ ++F L  ++     +V+ A+  ++  LP      P   K N 
Sbjct: 61   AGVNTMSSRSSQGSTRVILQFDLDRDINGAAREVQAAINASRNLLPSGMRSMPTYKKVNP 120

Query: 134  SGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGLYKVMYVKLRPEQM 193
            S  P + ++L+S V+++ QL D A  +L    S + GV  + I G     + ++L P+ +
Sbjct: 121  SQAPIMVLSLTSDVLEKGQLYDLASTILSQSLSQVQGVGEVQIGGSSLPAVRIELEPQAL 180

Query: 194  AGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDFDYLVVRTASDGTP 253
                V + D+   +   N+  P G V +   +  ++        KD++ L++  A DG  
Sbjct: 181  NQYGVALDDVRKTIADANVRRPKGSVEDGERLWQIQANDQLEKAKDYESLIIHYA-DGAA 239

Query: 254  IYLKDVADVAVGAQNE-NSTFKSDGIVNLSLGVITQSDANPLVVAQEVHKEVDKIQDFLP 312
            + LKDVA V+ G ++  NS F +D    L L +  Q+ AN +    E+  ++  +Q  LP
Sbjct: 240  LRLKDVAKVSDGVEDRYNSGFFNDDAAVL-LVINRQAGANIIETVNEIKAQLPALQAVLP 298

Query: 313  EGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATLIPAVTVPVSLIS 372
                L +  D +  I  +++E   TL +  ALVVLV+Y+F+G  RA+LIP + VPVSL+ 
Sbjct: 299  ASVKLNLAMDRSPVIKATLHEAEMTLLIAVALVVLVVYLFLGNFRASLIPTLAVPVSLVG 358

Query: 373  AFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEPLLAAYKGTREVG 432
             F    ++G+S+N L+LMALILA GLVVDDAIVV+ENI  HI++G +P+ AAY G +EVG
Sbjct: 359  TFAVMYLYGFSLNNLSLMALILATGLVVDDAIVVLENISRHIDEGVKPMQAAYLGAKEVG 418

Query: 433  FAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALTLTPVLSSKLLKA 492
            F +++    LV VFL I FM G+V  LF EFS+ LA +++ S +++LTLTP+L ++ LK 
Sbjct: 419  FTLLSMNVSLVAVFLSILFMGGLVESLFREFSITLAAAIVVSLVVSLTLTPMLCARWLKP 478

Query: 493  NV--KPNRFNRFVDRGFARMEKLYHVGVTHAIRFRLLAPLVILACIGGSVWLMQQVPAQL 550
            +   + NR  R+  +    M   Y   +   +R R L    +L  +G ++ L   VP   
Sbjct: 479  HTPGQENRLQRWSHKTNDWMVGKYATSLDWVLRHRRLTLFSLLLTVGVNIALYVVVPKTF 538

Query: 551  APQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPLLGQGVLRSFSVQAPA--FGGRA 608
             PQ+D G L  FV+G +G S+N M   M+           + VL+  +V++ A   GG  
Sbjct: 539  LPQQDTGQLIGFVRGDDGLSFNVMQPKMETFR--------RAVLKDEAVESVAGFIGGNN 590

Query: 609  GDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMVRPM------MPGFRGQSSEP 662
            G    ++I++L+  + R ++AQ+ +  + K +  +P   +  M        G R Q+S  
Sbjct: 591  GTNNAFMIVRLKPIKERQLSAQKVIERLRKEMPKVPGAQLMLMADQDLQFGGGREQTSSQ 650

Query: 663  VQFVLGGSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTVDKERAAELGISV 722
              ++L   D AEL KW   +     A P +   D        ++ + VD+++A  LG+ +
Sbjct: 651  YTYILQSGDLAELRKWFPKVVTALRALPELTAIDAREGAGAQQVTLIVDRDQAKRLGVDM 710

Query: 723  DDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYMRSAKGELVTLDT 782
            + V+  L      R+ +T  D   +Y V +  +     +   L Q+ + +A G  V L T
Sbjct: 711  NMVTAVLNNAYSQRQISTIYDSLNQYQVVMEVNPKYAQDPVTLKQVEVINADGARVPLST 770

Query: 783  VTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEALTFLENKSIEL-LPKDISIGYTG 841
              H E      R+SH  +  S ++  ++++G T+ +    +E    ++ LP+D+     G
Sbjct: 771  FAHYENSLENDRVSHEGQFASESISFDMAEGVTVEQGSAAIERAIAKVGLPEDVIAKMAG 830

Query: 842  ESKDFKENQ-SSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMGVFGGFLGLLVTS 900
             +  F   Q S  F++ G ALL  YLVL   +ES+I+PL ++ T+P    G  L +    
Sbjct: 831  TADAFAATQKSQPFMILG-ALLAVYLVLGVLYESYIHPLTILSTLPSAGVGALLSIYALG 889

Query: 901  QGINIYSQIGMIMLIGMVTKNGILIVEFANQL-RDRGLALDKAIIDASTRRLRPILMTAF 959
               ++ S +G+ +LIG+V KN IL+++ A QL R +GL+  ++I  A  +RLRPILMT  
Sbjct: 890  GEFSLISLLGIFLLIGVVKKNAILMIDLALQLERHQGLSPLESIRSACLQRLRPILMTTL 949

Query: 960  TTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYRLISAATH 1013
              ++GA+PL+     G+E R  +G  +  G+ F+  +TL+  P +Y  +    H
Sbjct: 950  AAILGALPLLLGRAEGAEMRQPLGLTIIGGLVFSQVLTLYTTPVVYLYLDKLRH 1003