Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1008 a.a., multidrug efflux RND transporter permease subunit from Pseudomonas fluorescens SBW25

 Score =  620 bits (1599), Expect = 0.0
 Identities = 355/1021 (34%), Positives = 598/1021 (58%), Gaps = 30/1021 (2%)

Query: 1    MWLSDVSVKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIME 60
            M  +DV ++RPV+A+V+SLL+ + G  +++KL +R+ P +E+ ++TV+T+Y GA+A  ++
Sbjct: 1    MKFTDVFIRRPVLAMVVSLLIVLLGFQAYSKLPLRQYPSMENALITVTTAYPGANAETIQ 60

Query: 61   SQITKTLEDELTGISGIDEITSTTRNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLP 120
              IT+ L+  L    GID +TS +R   S I++   +G N     +++       + +LP
Sbjct: 61   GYITQPLQQSLASAEGIDYMTSVSRQNFSVISIYARIGANSDRLFTELLAKANEVKNKLP 120

Query: 121  EDANDPVVSKDNGSGEPSVYVNLSSSVMDRTQLTDYAQRVLEDRFSLISGVSSISISGGL 180
            +DA DPV+SK+       +Y++ SS  +   Q+TDY  RV++ + + + G++   I G  
Sbjct: 121  QDAEDPVLSKEAADASALMYISFSSGQLSNPQITDYLSRVIQPKLATLPGMAEAEILGNQ 180

Query: 181  YKVMYVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTVMSVRTKRLYYTPKDF 240
               M + L P ++AG  ++ +DIT A+R+ N  +  G+V+ +  V S+       +   F
Sbjct: 181  VFAMRIWLDPVKLAGFGLSASDITDAVRRYNFLSAAGEVKGEFVVTSINANTDLKSADAF 240

Query: 241  DYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQEV 300
              + V+TA D   + L+DVA V +GA+N N+     G  ++ +G+     ANPL V +EV
Sbjct: 241  GAITVKTAGDSR-VLLRDVARVEMGAENYNAISSFGGTPSVYIGIKATPSANPLDVIKEV 299

Query: 301  HKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRATL 360
             K + +++  LP      + +D+T+FI  SINEV  TL+    +V++V+++F+G +R+ +
Sbjct: 300  RKIMPELESQLPPTLKAEIAYDATLFIQASINEVVKTLFEAVLIVIVVVFLFLGALRSVV 359

Query: 361  IPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHIEKGEEP 420
            IP +T+P+S+I       + GYSINLLTL+A++LAIGLVVDDAIVVVENI  HIE G+ P
Sbjct: 360  IPVITIPLSMIGVLFFMQLMGYSINLLTLLAMVLAIGLVVDDAIVVVENIHRHIEDGKTP 419

Query: 421  LLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLIALT 480
            L AA +G RE+   VV+ T  L  V+ PI F+EG+ G LF EF++ LA +V+ S ++ALT
Sbjct: 420  LDAALEGAREIALPVVSMTVTLAAVYAPIGFLEGLTGALFKEFALTLAGAVIISGIVALT 479

Query: 481  LTPVLSSKLLKANVKPNRFNRFVDRGFARMEKLYHVGVTHAIRFR---LLAPLVILACIG 537
            L+P++ + LL+ +  P+     +DR F  +++ Y   +   +  R   ++  L++L  I 
Sbjct: 480  LSPMMCALLLRHDENPSGLAHRLDRIFDSLKRRYQSMLHGTLNTRPVVIVFALIVLCLIP 539

Query: 538  GSVWLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPLLGQGVLRSF 597
              +   Q   +QLAP ED+G+++      + T+ +     ++   D  + +  +      
Sbjct: 540  VFLKFTQ---SQLAPDEDQGIIFMMASAPQPTNLD----YLNTYTDEFIKIFKEFPEYYS 592

Query: 598  SVQAPAFGGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVMV----RPMMP 653
            S Q   F G      G++   L+ W  R+ T  Q L  + K L+ IP + V     P +P
Sbjct: 593  SFQINGFNGVQSGIGGFL---LKPWNERDRTQMQILPEVQKRLEQIPGLQVFGFNLPSLP 649

Query: 654  GFRGQSSEPVQFVLG-GSDYAELFKWAQVLKEQANASPMMEGADLDYAETTPELIVTVDK 712
            G  G+   P  FV+   +DY  L   A  +K++A AS      D+D A   PE++V +D+
Sbjct: 650  G-TGEGL-PFGFVINTANDYESLLDVANRVKKRAMASGKFAFVDIDLAFDKPEVVVDIDR 707

Query: 713  ERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQIYMRS 772
             +AA++G+S+ D+  TL  +L   +   +   G  Y V  + +    +N   L+  Y+++
Sbjct: 708  AKAAQMGVSMQDLGGTLATLLAEAEINRFTLDGRSYKVIAQVERAYRDNPDWLNNYYVKN 767

Query: 773  AKGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGY---TLGEALTFLENKSIE 829
            A+GEL+ L T+  + + A  ++L+   +     L + +  G+   ++GEA+  +   ++E
Sbjct: 768  AQGELLPLSTLITLTDRARPRQLNQFQQ-----LNSALISGFPIVSMGEAIDTVRQIALE 822

Query: 830  LLPKDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVMFTVPMGV 889
              P   +  Y+G S+ F +  +++++ FGLAL + +LVLAAQFESF +PLV++ TVP+ +
Sbjct: 823  ETPPGYAFDYSGASRQFIQEGTALWVTFGLALAIIFLVLAAQFESFRDPLVILVTVPLSI 882

Query: 890  FGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLR-DRGLALDKAIIDAST 948
             G  + L +    +NIY+Q+G++ LIG+++K+GILIVEFANQLR D+GL   +A+ +A+ 
Sbjct: 883  CGALIPLFLGWSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRKDKGLTPRQAVEEAAA 942

Query: 949  RRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIPAMYRLI 1008
             RLRP+LMT    + G +PLIF+TGAG+ SR  +G V+  GM+  T  TLFV+P +Y L+
Sbjct: 943  IRLRPVLMTTAAMVFGMVPLIFATGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCVYTLL 1002

Query: 1009 S 1009
            +
Sbjct: 1003 A 1003