Pairwise Alignments

Query, 1046 a.a., AcrB/AcrD/AcrF family protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 1055 a.a., Efflux pump membrane transporter BepE from Methylophilus sp. DMC18

 Score =  523 bits (1348), Expect = e-152
 Identities = 326/1028 (31%), Positives = 547/1028 (53%), Gaps = 29/1028 (2%)

Query: 8    VKRPVVAIVLSLLLCVFGLVSFTKLSVREMPDVESPVVTVSTSYSGASAAIMESQITKTL 67
            + RP+ A VLS+++ + GL +  +L + + P +  P V ++ SY GASA  +   +   +
Sbjct: 16   ITRPIFASVLSIIIVLAGLAAAFQLPIAQYPQIAPPTVLITASYPGASAETLSKTVAAPI 75

Query: 68   EDELTGISGIDEITSTT-RNGSSRITVKFLLGWNLTEGVSDVRDAVARAQRRLPEDANDP 126
            E++L+G+  +    S++  +G+  IT  F +G ++ +   +V + V  A  RLPED    
Sbjct: 76   EEQLSGVENLLYFNSSSDSSGTLTITATFDVGTDVNQATFNVSNRVNIALPRLPEDVRRT 135

Query: 127  VVSKDNGSGEPSVYVNLSSSVMDRTQL--TDYAQRVLEDRFSLISGVSSISISGGLYKVM 184
             V     S +  + V L+S   D  +L  ++YA   L D F  I GV  ++I GG    M
Sbjct: 136  GVVVQKRSNDILLVVMLTSKNKDHNRLFLSNYATLNLLDEFKRIKGVGDVTIFGGQDYSM 195

Query: 185  YVKLRPEQMAGRNVTVTDITSALRKENIETPGGQVRNDTTV------MSVRTKRLYYTPK 238
             V LRP++MA   V+ +DI++A+  +N +   G++  +  +       +V  K     P+
Sbjct: 196  RVWLRPDRMAQLGVSTSDISAAISAQNAQYAAGKIGAEPALPDQQLSFTVTAKGRLIDPE 255

Query: 239  DFDYLVVRTASDGTPIYLKDVADVAVGAQNENSTFKSDGIVNLSLGVITQSDANPLVVAQ 298
            +F  +++R       ++LKDVA + +GAQ+ N T   DG   +++ V  Q+ AN L  A 
Sbjct: 256  EFGNIILRAQGPNGVLHLKDVARIELGAQSYNVTSALDGQAGVAMPVFLQTGANALDTAN 315

Query: 299  EVHKEVDKIQDFLPEGTSLVVDFDSTVFIDRSINEVYNTLYVTGALVVLVLYIFIGQVRA 358
             +  +V++++   P+G    + +D++ F+  +I EV++T      LVV+V+++F+   RA
Sbjct: 316  AIKAKVEELKAKFPQGMEYNIPYDTSDFVKATIKEVFHTFGEALVLVVIVVFLFLQSWRA 375

Query: 359  TLIPAVTVPVSLISAFIAANMFGYSINLLTLMALILAIGLVVDDAIVVVENIFHHI-EKG 417
            TLIP + VP+S++  F    +FG+SINLLTL A+ILAIG+VVDDAIVV+EN    + E+G
Sbjct: 376  TLIPMIAVPISIVGTFAGLYVFGFSINLLTLFAMILAIGIVVDDAIVVLENTERLMKEEG 435

Query: 418  EEPLLAAYKGTREVGFAVVATTAVLVMVFLPISFMEGMVGLLFTEFSVMLAVSVLFSSLI 477
              PL AA K   +V  AVVA   VL  VF+P++F  G+ G L+ +F+V +A++V+ S ++
Sbjct: 436  LNPLHAAIKSIAQVQAAVVAIVLVLCAVFVPVAFQGGIAGQLYRQFAVTVAIAVVISGVV 495

Query: 478  ALTLTPVLSSKLLKANVK-PNRFNRFVDRGFARMEKLYHVGVTHAIRFRLLAPLVILACI 536
            ALTLTP L + +LK+     N F R  ++GF R+  LY   V   +R +L+  +V  A +
Sbjct: 496  ALTLTPALCAMILKSGGHHENAFFRKFNQGFGRLTNLYTGTVRLTLRHKLIGAVVFGAML 555

Query: 537  GGSVWLMQQVPAQLAPQEDRGVLYAFVKGAEGTSYNRMTANMDIVEDRLMPLLGQGVLRS 596
               ++L + VP    P ED+G + + V   +G +  R +  M+ +   +           
Sbjct: 556  VVMIFLFRTVPGGFVPPEDQGYVISIVVMPDGATLKRTSQTMENIRSAVAK--DPATAHE 613

Query: 597  FSVQA-PAFGGRAGDQTGYVIMQLEDWEHRNVTAQQALGIISKALKDIPDVM---VRPMM 652
            F+V       G        + +++ DWE R   A Q +G +       PD M   V P  
Sbjct: 614  FAVNGFELLTGANKTNAATMFVRMTDWEKRTTNADQMVGKLIGIGMSQPDGMGFAVNP-- 671

Query: 653  PGFRGQSSEP-VQFVLGGSDYAELFKWAQVLK---EQANASPMMEGADLDYAETTPELIV 708
            P  RG  S    +  +      +  K AQV+    +   A+P +   +  +  T P+L +
Sbjct: 672  PAIRGLGSAGGFEVYVQSHGDTDPIKLAQVMNNFMDAMRANPQLTQINSFFRPTVPQLYI 731

Query: 709  TVDKERAAELGISVDDVSQTLEVMLGGRKETTYVDRGEEYDVYLRGDENSFNNVGDLSQI 768
             VD+ +A    + + D+  TL+  +G      +   G  Y V L+ +        DL ++
Sbjct: 732  EVDEAKALSQNVKIADIYATLQSTMGSLYVNDFNRNGRTYRVQLQAEAGYRMKPEDLGKV 791

Query: 769  YMRSA------KGELVTLDTVTHIEEVASAQRLSHTNKQKSITLKANISKGYTLGEALTF 822
            Y+RS        G +V +  +  +  +  A++L   N   S  +  + + G + G+A+  
Sbjct: 792  YVRSQPTDDNPNGNMVPMSALAKVSNIVGAEQLERYNGLLSAKVFGSGAPGVSSGDAIKL 851

Query: 823  LENKSIELLPKDISIGYTGESKDFKENQSSIFIVFGLALLVAYLVLAAQFESFINPLVVM 882
            +E  + E LP    I +TG++   K   S+  + FG A ++ +L+LAAQFE++  PL V+
Sbjct: 852  VEKIAKENLPDGYQIAWTGQAYQEKRTGSAALVAFGFATIMVFLILAAQFETWSLPLAVI 911

Query: 883  FTVPMGVFGGFLGLLVTSQGINIYSQIGMIMLIGMVTKNGILIVEFANQLRDRGLALDKA 942
              +P  + G  L +L      +IY QIG+I LIG+  KN ILIVEFA+Q  + G+ L +A
Sbjct: 912  MAIPFAMTGALLAVLTRGMNNDIYFQIGLITLIGLAAKNAILIVEFASQKMEEGMPLAEA 971

Query: 943  IIDASTRRLRPILMTAFTTLVGAIPLIFSTGAGSESRIAVGTVVFFGMAFATFVTLFVIP 1002
             ++A+  R RPI+MT+   ++G IPL+F+TGAG+ +R ++GT VF GM  ATF+    IP
Sbjct: 972  ALEAARLRFRPIVMTSMAFVLGIIPLVFATGAGAAARQSMGTGVFGGMLLATFIATIFIP 1031

Query: 1003 AMYRLISA 1010
              +  +++
Sbjct: 1032 LFFTWLTS 1039