Pairwise Alignments

Query, 555 a.a., ABC transporter, ATP-binding protein (NCBI ptt file) from Shewanella oneidensis MR-1

Subject, 642 a.a., DNA-binding ATPase involved in replication from Pseudomonas putida KT2440

 Score =  331 bits (849), Expect = 5e-95
 Identities = 187/513 (36%), Positives = 296/513 (57%), Gaps = 9/513 (1%)

Query: 21  ILKDISLSFFPGAKIGVLGLNGSGKSTLLRIMAGIDTEIEGEARPMPGLKIGYLPQEPKL 80
           +L  +S     G ++ ++G NG+GKS++LR++ G     +GE    PGLKIG LPQE  +
Sbjct: 18  LLDKVSWQIARGERVCIIGRNGTGKSSMLRLVKGEQKGDDGEIWRAPGLKIGELPQELPV 77

Query: 81  DPNQTVREAIEEAVSEAKNALKRLDEVYAAYAEPDADFDALAKEQGELEAIIQAQDAHNL 140
              +TV + +   +      L +   + +   + D D + L   Q ELEA    +D   L
Sbjct: 78  ADERTVFDVVAAGLDGVGELLAQFHHL-SMNIQGDEDLEKLMHVQHELEA----RDGWRL 132

Query: 141 DNILERAANALRLPDWDEKIEVLSGGERRRVAICRLLLEKPEMLLLDEPTNHLDAESVAW 200
             ++E   + L+LP  D+ +  LSGG RRRV + + L+ +P++LLLDEPTNHLD  ++AW
Sbjct: 133 QQVVESTLSRLQLPA-DKTLAELSGGWRRRVLLAQALVSEPDLLLLDEPTNHLDIGAIAW 191

Query: 201 LEHFLQEYAGTVVAITHDRYFLDNAAGWILELDRGEGIPWEGNYSSWLEQKDARLKQESA 260
           LE  L+ + G V+ ITHDR FL N A  ILELDRG  I W G+Y+S+L  K+A L  E  
Sbjct: 192 LEEALRGFNGAVLFITHDRSFLQNLATRILELDRGGLIDWNGDYASFLVHKEAALAAEET 251

Query: 261 AESARQKTIAKELEWVRQGAKGRQSKGKARMARFEELNTNDYQKRNETNE--LFIPPGPR 318
           A +   K +A+E  W+RQG K R+++ + R+   + L     ++R    +  + I    +
Sbjct: 252 ANALFDKRLAQEEVWIRQGIKARRTRNEGRVRALKALRVERGERRERQGKANIQIEAADK 311

Query: 319 LGDKVIEVNNLTKSYGDR-VLIDNLSFSVPKGAIVGIIGANGAGKSTLFRMLSGSEQPDS 377
            G +V+ + N++  + D  +L+ + S  + +   +G++GANG GK+TL +M+ G  +P +
Sbjct: 312 SGKQVMVLENVSFHHADGPLLVKDFSMVLQRQDRIGLLGANGTGKTTLLKMMLGDLEPTA 371

Query: 378 GSIELGETVQLASVEQFRDSMNDKNTIWQEISGGQDIMRINNMEIPSRAYVGRFNFRGGD 437
           G +E G  +++A  +Q R  ++ + T+   ++ G+D + I+       +Y+G F F    
Sbjct: 372 GKVERGTKLEVAYFDQMRHQLDLEKTVIDNLAEGRDFIEIDGQNRHVLSYLGDFLFSPQR 431

Query: 438 QQKIIGTLSGGERNRVHLAKLLQAGGNVLLLDEPTNDLDVETLRALEEAILEFPGCAMVI 497
            +  +  LSGGER R+ LAKL     N+L+LDEPTNDLDVETL  LEE +  + G  +++
Sbjct: 432 ARTPVKALSGGERARLLLAKLFSKPANLLVLDEPTNDLDVETLELLEEVLSNYKGTVLMV 491

Query: 498 SHDRWFLDRIATHILDYRDEGQVNFYEGNYTEY 530
           SHDR FLD + T  L +  EG+V  Y G Y ++
Sbjct: 492 SHDRAFLDNVVTSTLVFEGEGKVREYVGGYEDW 524



 Score =  100 bits (249), Expect = 2e-25
 Identities = 69/237 (29%), Positives = 121/237 (51%), Gaps = 30/237 (12%)

Query: 323 VIEVNNLTKSYGDRVLIDNLSFSVPKGAIVGIIGANGAGKSTLFRMLSGSEQPDSGSI-- 380
           +++ ++++ ++G   L+D +S+ + +G  V IIG NG GKS++ R++ G ++ D G I  
Sbjct: 3   LLKFSDVSLAFGAMPLLDKVSWQIARGERVCIIGRNGTGKSSMLRLVKGEQKGDDGEIWR 62

Query: 381 ----ELGETVQ--------------LASVEQFRDSMNDKNTIWQEISGGQDIMRINNMEI 422
               ++GE  Q               A ++   + +   + +   I G +D+ ++ +++ 
Sbjct: 63  APGLKIGELPQELPVADERTVFDVVAAGLDGVGELLAQFHHLSMNIQGDEDLEKLMHVQH 122

Query: 423 PSRAYVG---------RFNFRGGDQQKIIGTLSGGERNRVHLAKLLQAGGNVLLLDEPTN 473
              A  G           +       K +  LSGG R RV LA+ L +  ++LLLDEPTN
Sbjct: 123 ELEARDGWRLQQVVESTLSRLQLPADKTLAELSGGWRRRVLLAQALVSEPDLLLLDEPTN 182

Query: 474 DLDVETLRALEEAILEFPGCAMVISHDRWFLDRIATHILDYRDEGQVNFYEGNYTEY 530
            LD+  +  LEEA+  F G  + I+HDR FL  +AT IL+  D G +  + G+Y  +
Sbjct: 183 HLDIGAIAWLEEALRGFNGAVLFITHDRSFLQNLATRILEL-DRGGLIDWNGDYASF 238